Factsheet for Bra009835.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra001802.1-P
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P
Bra023927.1-P
Bra035746.1-P
Bra036257.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25350.1	Bra003735.1-P	AT1G75950.1	14675533
AT5G25350.1	Bra008231.1-P	AT1G75950.1	14675533
AT5G25350.1	Bra015801.1-P	AT1G75950.1	14675533
AT5G25350.1	Bra001802.1-P	AT3G20770.1	14675532
AT5G25350.1	Bra023927.1-P	AT3G20770.1	14675532
AT5G25350.1	Bra035746.1-P	AT3G20770.1	14675532
AT5G25350.1	Bra001802.1-P	AT3G20770.1	14675533
AT5G25350.1	Bra023927.1-P	AT3G20770.1	14675533
AT5G25350.1	Bra035746.1-P	AT3G20770.1	14675533
AT5G25350.1	Bra000874.1-P	AT4G02570.1	14675533
AT5G25350.1	Bra036257.1-P	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88173	Canola	cytosol	99.04	99.04
AT5G25350.1	Thale cress	cytosol	86.66	86.52
Bra036542.1-P	Field mustard	cytosol	82.64	83.44
Bra034254.1-P	Field mustard	cytosol	57.07	57.07
KRH15886	Soybean	cytosol	58.52	56.52
VIT_04s0008g05470.t01	Wine grape	cytosol	58.68	54.72
KRH05167	Soybean	cytosol	53.22	54.26
KRH61771	Soybean	cytosol	54.34	53.14
PGSC0003DMT400040977	Potato	nucleus	56.75	52.77
KRH52439	Soybean	cytosol, nucleus, peroxisome	53.7	52.35
Solyc08g060810.2.1	Tomato	plastid	55.79	52.18
GSMUA_Achr4P30680_001	Banana	cytosol	48.87	46.63
PGSC0003DMT400089433	Potato	mitochondrion	34.24	46.41
GSMUA_Achr6P05220_001	Banana	cytosol	48.55	46.18
PGSC0003DMT400094835	Potato	cytosol	18.17	46.12
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	48.07	45.72
PGSC0003DMT400042949	Potato	cytosol	40.19	45.29
Solyc06g049010.1.1	Tomato	plastid	44.86	45.0
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	48.07	44.76
Zm00001d053642_P001	Maize	cytosol	46.46	44.39
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	46.62	44.27
TraesCS6D01G169200.1	Wheat	cytosol	46.14	44.22
TraesCS6A01G181900.1	Wheat	cytosol	45.98	44.07
Zm00001d015778_P001	Maize	cytosol	45.5	44.01
HORVU7Hr1G090240.1	Barley	cytosol	38.1	43.97
TraesCS6B01G210700.1	Wheat	cytosol	45.82	43.91
HORVU6Hr1G038430.3	Barley	plastid	45.98	43.8
Os02t0200900-01	Rice	cytosol	46.46	43.79
EER90022	Sorghum	cytosol, plastid	44.05	43.77
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	18.65	43.61
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	45.66	42.52
TraesCS7B01G278800.1	Wheat	cytosol	44.21	42.5
TraesCS7D01G373800.1	Wheat	cytosol	44.05	42.09
TraesCS7A01G377500.1	Wheat	cytosol	43.89	42.06
Os06t0605900-01	Rice	cytosol	41.64	41.31
Solyc06g030610.1.1	Tomato	cytosol	17.85	40.51
Solyc06g030620.1.1	Tomato	cytosol	12.38	38.31
Zm00001d036880_P003	Maize	cytosol	44.37	37.5
Zm00001d000408_P001	Maize	cytosol	43.89	36.74
HORVU5Hr1G029670.1	Barley	mitochondrion	29.58	35.87
HORVU5Hr1G000950.4	Barley	plastid	25.4	35.35
Bra009671.1-P	Field mustard	cytosol	16.24	24.94
Bra029367.1-P	Field mustard	cytosol	15.92	24.09
Bra003692.1-P	Field mustard	cytosol	13.83	23.96
Bra015699.1-P	Field mustard	cytosol	13.34	23.45
Bra012785.1-P	Field mustard	cytosol	23.63	23.41
Bra016422.1-P	Field mustard	cytosol	13.18	23.23
Bra007401.1-P	Field mustard	cytosol	9.0	22.76
Bra029994.1-P	Field mustard	cytosol	18.65	22.7
Bra032213.1-P	Field mustard	plastid	17.85	21.6
Bra005669.1-P	Field mustard	cytosol	22.83	21.26
Bra036607.1-P	Field mustard	cytosol	21.7	21.13
Bra037120.1-P	Field mustard	cytosol	17.68	20.91
Bra029656.1-P	Field mustard	cytosol	13.18	20.76
Bra009931.1-P	Field mustard	cytosol	20.74	20.16

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	EnsemblPlantsGene:Bra009835	EnsemblPlants:Bra009835.1
EnsemblPlants:Bra009835.1-P	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
UniProt:M4D037	PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44327	PANTHER:PTHR44327:SF1	SMART:SM00367
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000253F2E8	SEG:seg	:	:

Description

AT5G25350 (E=6e-292) EBF2 | EBF2 (EIN3-BINDING F BOX PROTEIN 2); protein binding

Coordinates

chrA06:-:17588166..17590180

Molecular Weight (calculated)

65248.9 Da

IEP (calculated)

8.058

GRAVY (calculated)

0.166

Length

622 amino acids

Sequence
(BLAST)

001: MSGIFRVSGD DEFFTGGGGS SMHLSPGSCP GVYLPARKRL RVTAAATSFY SSFEEKQASI QVLPDECLFE ILRRLPSSGR ERSACACVSK HWLSVLSSIT
101: RDESVEEVES EGFLSRSLEG NKATDLRLAA ISVGTSACGG LGKLQIRGSG FESKVTDAGL GAVARGCASL KVLSLWNLPA VSDVGVSEIA RSCPMIEKLD
201: LSRCPGITDK GLVAIAENCK NLSDLTIDSC SGVGNEGLRA VARGCGNLRS ISIKSCPRIG DQGVSFLLAQ AGSYLTKVKL QMVNVSGLSL AVLGHYGAAV
301: TDLVLHGLQG VNEKGFWVMG NAKGMKKLKS LSVTACRGMT DVGLEAVGNG CTDLKHVSLN KCLLVSGKGL VALAKSASSL ESLKLEECHR INQFGFLGFL
401: MNCGVKLKSF SLTNCLGISE APLPSSSTSC SSLRSLSIRH CPGFGDASLS FLGKLCHQLQ DIELCGLNGV TDAGVFELVQ SNSVGLVKVK LSGCINVADN
501: TVSAVSVCHG RTLESLNVDG CKNITDASLV AVAKNCYSVN DLDVSNTLVS DQGVKALASS PNHLNLQVLS IGGCSGVTDK SKACIQKLGR ALLGLNIQRC
601: GRISSSTVDN LLEHLWRCDI LY

Best Arabidopsis Sequence Match ( AT5G25350.1 )
(BLAST)

001: MSGIFRFSGD EDCLLGGSMY LSPGSCPGVY YPARKRLRVA ATSFYSGFEE KQTSIDVLPE ECLFEILRRL PSGQERSACA CVSKHWLNLL SSISRSEVNE
101: SSVQDVEEGE GFLSRSLEGK KATDLRLAAI AVGTSSRGGL GKLQIRGSGF ESKVTDVGLG AVAHGCPSLR IVSLWNLPAV SDLGLSEIAR SCPMIEKLDL
201: SRCPGITDSG LVAIAENCVN LSDLTIDSCS GVGNEGLRAI ARRCVNLRSI SIRSCPRIGD QGVAFLLAQA GSYLTKVKLQ MLNVSGLSLA VIGHYGAAVT
301: DLVLHGLQGV NEKGFWVMGN AKGLKKLKSL SVMSCRGMTD VGLEAVGNGC PDLKHVSLNK CLLVSGKGLV ALAKSALSLE SLKLEECHRI NQFGLMGFLM
401: NCGSKLKAFS LANCLGISDF NSESSLPSPS CSSLRSLSIR CCPGFGDASL AFLGKFCHQL QDVELCGLNG VTDAGVRELL QSNNVGLVKV NLSECINVSD
501: NTVSAISVCH GRTLESLNLD GCKNITNASL VAVAKNCYSV NDLDISNTLV SDHGIKALAS SPNHLNLQVL SIGGCSSITD KSKACIQKLG RTLLGLNIQR
601: CGRISSSTVD TLLENLWRCD ILY

Arabidopsis Description

EBF2EIN3-binding F-box protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q708Y0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.