Factsheet for Bra007401.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06032	Canola	cytosol	97.56	67.99
AT3G58530.1	Thale cress	cytosol	86.99	60.62
PGSC0003DMT400074998	Potato	cytosol	65.85	46.82
VIT_08s0007g07030.t01	Wine grape	cytosol	66.26	46.57
Solyc06g005380.2.1	Tomato	cytosol	64.63	45.95
EES04933	Sorghum	cytosol	62.6	44.13
TraesCS3D01G067600.2	Wheat	cytosol	60.57	42.57
KRH38032	Soybean	cytosol	65.04	42.33
TraesCS3A01G067800.1	Wheat	cytosol	60.16	42.17
GSMUA_Achr2P17760_001	Banana	cytosol	60.57	42.09
TraesCS3B01G080300.1	Wheat	cytosol	59.35	41.6
HORVU3Hr1G012530.12	Barley	cytosol	59.35	41.6
Os02t0281150-01	Rice	cytosol	60.16	41.57
Zm00001d015974_P002	Maize	cytosol	60.16	41.34
Bra015699.1-P	Field mustard	cytosol	16.26	11.3
Bra003692.1-P	Field mustard	cytosol	16.26	11.14
Bra016422.1-P	Field mustard	cytosol	15.45	10.76
Bra009671.1-P	Field mustard	cytosol	16.26	9.88
Bra037120.1-P	Field mustard	cytosol	20.73	9.7
Bra029367.1-P	Field mustard	cytosol	15.85	9.49
Bra029994.1-P	Field mustard	cytosol	19.51	9.39
Bra009931.1-P	Field mustard	cytosol	23.98	9.22
Bra005669.1-P	Field mustard	cytosol	24.8	9.13
Bra009835.1-P	Field mustard	cytosol	22.76	9.0
Bra036542.1-P	Field mustard	cytosol	22.36	8.93
Bra036607.1-P	Field mustard	cytosol	22.76	8.76
Bra032213.1-P	Field mustard	plastid	18.29	8.75
Bra034254.1-P	Field mustard	cytosol	21.95	8.68
Bra012785.1-P	Field mustard	cytosol	21.54	8.44
Bra029656.1-P	Field mustard	cytosol	10.57	6.58

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra007401	EnsemblPlants:Bra007401.1	EnsemblPlants:Bra007401.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
UniProt:M4CT59	PFAM:PF13516	PANTHER:PTHR44001	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI0002542DDD
SEG:seg	:	:	:	:	:

Description

AT3G58530 (E=9e-035) | F-box family protein-related

Coordinates

chrA09:+:29005296..29007527

Molecular Weight (calculated)

27724.9 Da

IEP (calculated)

6.266

GRAVY (calculated)

0.068

Length

246 amino acids

Sequence
(BLAST)

001: MESKKVMEEE EEMWRREIVT SVMRIVSTRL PQRDLISLLL VSPWLYRTLV SYPSIWLNID LRERTNAGDR LLAALSLCHD ALSSLECLNL NGCQKISDSG
101: IEAITSICPK LKVISIYWNS ITDKGMQLVA ETYQDLEALN ITSFTDKAYK KISLLAELRF LDLCGAQNLS DEGLGHIAKC NKLETLNLTC LFGIVGVTDR
201: CLEALSQTCS ATLTTLDVNG CIGIKRRSRE ELLQMFPRLI CFKVHS

Best Arabidopsis Sequence Match ( AT3G58530.1 )
(BLAST)

001: MEAKKVTEEE EETWRREIVT SVMRLVSTRL PQTDLISLLL VSPWLYRTLI SYPSIWLTIN LREMTNAGDR LLAALSLPRY RQVKHINLEF AQGVVDSHLK
101: LVKTECPDAL LSLEWLNLNV CQKISDNGIE AITSICPKLK VFSIYWNVRV TDAGIRNLVK NCRHITDLNL SGCKSLTDKS MQLVAESYPD LESLNITRCV
201: KITDDGLLQV LQKCFSLQTL NLYALSGFTD KAYMKISLLA DLRFLDICGA QNISDEGIGH IAKCNKLESL NLTWCVRITD AGVNTIANSC TSLEFLSLFG
301: IVGVTDRCLE TLSQTCSTTL TTLDVNGCTG IKRRSREELL QMFPRLTCFK VHS

Arabidopsis Description

F-box protein At3g58530 [Source:UniProtKB/Swiss-Prot;Acc:Q8LB33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.