Factsheet for VIT_08s0007g07030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074998	Potato	cytosol	70.86	71.68
Solyc06g005380.2.1	Tomato	cytosol	69.71	70.52
CDX71945	Canola	cytosol	68.57	67.99
CDY06032	Canola	cytosol	67.43	66.86
AT3G58530.1	Thale cress	cytosol	67.14	66.57
Bra007401.1-P	Field mustard	cytosol	46.57	66.26
KRH38032	Soybean	cytosol	70.29	65.08
EES04933	Sorghum	cytosol	63.43	63.61
Os02t0281150-01	Rice	cytosol	64.57	63.48
GSMUA_Achr2P17760_001	Banana	cytosol	63.71	62.99
TraesCS3D01G067600.2	Wheat	cytosol	61.14	61.14
TraesCS3A01G067800.1	Wheat	cytosol	61.14	60.97
TraesCS3B01G080300.1	Wheat	cytosol	60.86	60.68
HORVU3Hr1G012530.12	Barley	cytosol	60.86	60.68
Zm00001d015974_P002	Maize	cytosol	62.0	60.61
VIT_10s0071g00310.t01	Wine grape	cytosol	20.0	16.95
VIT_05s0020g02400.t01	Wine grape	cytosol	25.43	14.57
VIT_14s0060g01970.t01	Wine grape	cytosol, plastid	26.57	14.46
VIT_18s0001g15010.t01	Wine grape	mitochondrion	17.43	14.25
VIT_11s0016g05410.t01	Wine grape	cytosol	24.0	12.67
VIT_04s0008g05470.t01	Wine grape	cytosol	24.0	12.59
VIT_06s0004g07520.t01	Wine grape	cytosol	23.71	12.54
VIT_08s0058g00700.t01	Wine grape	cytosol	23.14	12.22
VIT_18s0001g09940.t01	Wine grape	plastid	18.86	12.2
VIT_18s0072g00820.t01	Wine grape	cytosol, extracellular, peroxisome	18.29	11.9
VIT_07s0129g01110.t01	Wine grape	plastid	18.29	11.37

Protein Annotations

EntrezGene:100243447	wikigene:100243447	Gene3D:3.80.10.10	MapMan:35.1	EMBL:AM428974	ProteinID:CAN73494
ProteinID:CAN73494.1	ProteinID:CBI29975	ProteinID:CBI29975.3	UniProt:D7TI99	EMBL:FN595991	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	EntrezGene:LOC100243447	wikigene:LOC100243447
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF13516	PANTHER:PTHR44001	SMART:SM00367
SUPFAM:SSF52047	UniParc:UPI0001BE3574	ArrayExpress:VIT_08s0007g07030	EnsemblPlantsGene:VIT_08s0007g07030	EnsemblPlants:VIT_08s0007g07030.t01	RefSeq:XP_002276459
RefSeq:XP_002276459.1	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:20668185..20672671

Molecular Weight (calculated)

39116.9 Da

IEP (calculated)

7.978

GRAVY (calculated)

0.134

Length

350 amino acids

Sequence
(BLAST)

001: MEETEARAGG DLKWSRETIP KVLRIVGTRL PQRDLISLLL VSPWIHRTLV SCSSLWLVLD FRETNNAGNR LVAALSLFRY QHVKQINLEF AQDIEDKHLD
101: LLKTKCLDSL QELESLNLNV CQKISDRGVE TITSACPKLK VFSIYWNVRV TDIGMTHLVK NCKHIVDLNL SGCKNITDKS LQLIADNYPD LELLNLTRCI
201: KLTDGGLQQI LLKCSSLQSL NLYALSSFTD EAYKKISLLT DLRFLDLCGA QNLSDQGLCC IAKCKNLVSL NLTWCVRVTD VGVIAIAQGC TSLEFLSLFG
301: IVGVTDKCLE ALSRSCSNMI TTLDVNGCIG IKVHDIFSRK KLQGRGFLFT

Best Arabidopsis Sequence Match ( AT3G58530.1 )
(BLAST)

001: MEAKKVTEEE EETWRREIVT SVMRLVSTRL PQTDLISLLL VSPWLYRTLI SYPSIWLTIN LREMTNAGDR LLAALSLPRY RQVKHINLEF AQGVVDSHLK
101: LVKTECPDAL LSLEWLNLNV CQKISDNGIE AITSICPKLK VFSIYWNVRV TDAGIRNLVK NCRHITDLNL SGCKSLTDKS MQLVAESYPD LESLNITRCV
201: KITDDGLLQV LQKCFSLQTL NLYALSGFTD KAYMKISLLA DLRFLDICGA QNISDEGIGH IAKCNKLESL NLTWCVRITD AGVNTIANSC TSLEFLSLFG
301: IVGVTDRCLE TLSQTCSTTL TTLDVNGCTG IKRRSREELL QMFPRLTCFK VHS

Arabidopsis Description

F-box protein At3g58530 [Source:UniProtKB/Swiss-Prot;Acc:Q8LB33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.