Factsheet for VIT_14s0060g01970.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96764	Soybean	cytosol	66.56	66.77
KRH68483	Soybean	cytosol	66.56	66.77
Solyc01g099970.2.1	Tomato	extracellular	61.12	63.49
PGSC0003DMT400063732	Potato	cytosol	63.14	63.34
Bra009931.1-P	Field mustard	cytosol	60.5	60.78
CDX88253	Canola	cytosol	60.5	60.78
AT5G27920.1	Thale cress	cytosol, extracellular, peroxisome	60.5	60.59
CDX80608	Canola	cytosol	60.03	60.31
Bra036607.1-P	Field mustard	cytosol	59.1	59.47
CDY53337	Canola	cytosol	58.48	58.84
CDY19741	Canola	cytosol	56.3	58.67
GSMUA_Achr11P...	Banana	cytosol	54.74	53.66
GSMUA_Achr6P20450_001	Banana	cytosol	54.12	52.73
Os12t0552700-01	Rice	cytosol, peroxisome	29.55	50.94
TraesCS5A01G091800.2	Wheat	cytosol	52.26	50.83
TraesCS5B01G097800.2	Wheat	cytosol	52.1	50.68
Zm00001d023825_P001	Maize	cytosol	51.94	50.61
KXG23663	Sorghum	cytosol	52.1	50.6
TraesCS5D01G103900.3	Wheat	cytosol	52.26	50.45
Zm00001d041635_P002	Maize	cytosol	51.94	50.38
Zm00001d048695_P001	Maize	cytosol	49.61	49.23
KXG29052	Sorghum	plastid	50.39	49.09
HORVU5Hr1G024060.1	Barley	cytosol, plastid	52.41	39.98
VIT_08s0058g00700.t01	Wine grape	cytosol	40.28	39.06
VIT_06s0004g07520.t01	Wine grape	cytosol	37.01	35.95
VIT_10s0071g00310.t01	Wine grape	cytosol	19.91	30.99
VIT_08s0007g07030.t01	Wine grape	cytosol	14.46	26.57
VIT_05s0020g02400.t01	Wine grape	cytosol	24.88	26.19
VIT_11s0016g05410.t01	Wine grape	cytosol	23.79	23.08
VIT_18s0001g09940.t01	Wine grape	plastid	18.82	22.37
VIT_04s0008g05470.t01	Wine grape	cytosol	22.86	22.04
VIT_07s0129g01110.t01	Wine grape	plastid	18.35	20.96
VIT_18s0001g15010.t01	Wine grape	mitochondrion	13.69	20.56
VIT_18s0072g00820.t01	Wine grape	cytosol, extracellular, peroxisome	16.17	19.33

Protein Annotations

EntrezGene:100249393	Gene3D:3.80.10.10	MapMan:35.1	ProteinID:CBI39535	ProteinID:CBI39535.3	UniProt:D7U9X1
EMBL:FN596746	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
PFAM:PF13516	PANTHER:PTHR44309	PANTHER:PTHR44309:SF2	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI000198499C
ArrayExpress:VIT_14s0060g01970	EnsemblPlantsGene:VIT_14s0060g01970	EnsemblPlants:VIT_14s0060g01970.t01	unigene:Vvi.12878	RefSeq:XP_010659653.1	SEG:seg

Description

No Description!

Coordinates

chr14:-:1583753..1590294

Molecular Weight (calculated)

70445.8 Da

IEP (calculated)

7.915

GRAVY (calculated)

0.230

Length

643 amino acids

Sequence
(BLAST)

001: MASPSILCIL SDDILARIRS KLSSELDRKT WRLVCRDFLR VDSACRTSLR VLRTEFLPGL LQKCRNMESL DLSVCPRIND AMVAILLGRG SVCWTRGLRR
101: LVLSRATGLK SAGLELLTRS CPSLEAVDMS YCCGFGDREA SALSCAVGLR ELKLDKCLGV TDVGLATIAV GCNKLQRLSL KWCMELTDLG IDLLVKKCSN
201: LKFLDISYLQ VTSESLRSIA SLQKLEGLAM SGCSLVGDLG LHFLGNGCPS LLVIDVSRCD GVSSSGLISL IRGHSDLQQL NAGYSFPELS KMFFRQLKDM
301: KDLNSIKVDG ARVSDFSFQI ISANCKCLVE IGLSKCMGVT DLGIMQLVSG CLNLKIVNLT CCCFITDAAI LAVADSCRNL LCLKLESCNL ITEKSLDQLG
401: SCCLLLEELD LTDCSGVNDR GLEYLSRCSE LTCLKLGLCA NISDKGLFYI ASNCKKLREL DLYRCNSIGN DELAALSSGC KKLEKLNLSY CSEVTDTGME
501: YISQLKDLSD LELRGLVKIT STGLTAVAAG CMRLAELDLK HCQKIKDSGF WALAYYSRNL RQINLSNCTV SNMGLCMVMG NLTRLQDAKL VHLSNVTVDG
601: FELALRASCI RLKKVKLLAS LSSLFSSDLL QTLRERGCQI RWD

Best Arabidopsis Sequence Match ( AT5G27920.1 )
(BLAST)

001: MSTSPSILSV LSEDLLVRVY ECLDPPCRKT WRLISKDFLR VDSLTRTTIR ILRVEFLPTL LFKYPNLSSL DLSVCPKLDD DVVLRLALDG AISTLGIKSL
101: NLSRSTAVRA RGLETLARMC HALERVDVSH CWGFGDREAA ALSSATGLRE LKMDKCLSLS DVGLARIVVG CSNLNKISLK WCMEISDLGI DLLCKICKGL
201: KSLDVSYLKI TNDSIRSIAL LVKLEVLDMV SCPLIDDGGL QFLENGSPSL QEVDVTRCDR VSLSGLISIV RGHPDIQLLK ASHCVSEVSG SFLKYIKGLK
301: HLKTIWIDGA HVSDSSLVSL SSSCRSLMEI GLSRCVDVTD IGMISLARNC LNLKTLNLAC CGFVTDVAIS AVAQSCRNLG TLKLESCHLI TEKGLQSLGC
401: YSMLVQELDL TDCYGVNDRG LEYISKCSNL QRLKLGLCTN ISDKGIFHIG SKCSKLLELD LYRCAGFGDD GLAALSRGCK SLNRLILSYC CELTDTGVEQ
501: IRQLELLSHL ELRGLKNITG VGLAAIASGC KKLGYLDVKL CENIDDSGFW ALAYFSKNLR QINLCNCSVS DTALCMLMSN LSRVQDVDLV HLSRVTVEGF
601: EFALRACCNR LKKLKLLAPL RFLLSSELLE TLHARGCRIR WD

Arabidopsis Description

At5g27920 [Source:UniProtKB/TrEMBL;Acc:Q8GZ31]
SUBAcon: [peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.