Factsheet for Zm00001d041635_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG23663	Sorghum	cytosol	96.23	96.37
Zm00001d023825_P001	Maize	cytosol	94.72	95.15
Os12t0552700-01	Rice	cytosol, peroxisome	49.32	87.67
TraesCS5A01G091800.2	Wheat	cytosol	85.82	86.08
TraesCS5B01G097800.2	Wheat	cytosol	85.37	85.63
TraesCS5D01G103900.3	Wheat	cytosol	85.22	84.83
Zm00001d048695_P001	Maize	cytosol	70.59	72.22
HORVU5Hr1G024060.1	Barley	cytosol, plastid	84.92	66.79
GSMUA_Achr11P...	Banana	cytosol	61.54	62.2
GSMUA_Achr6P20450_001	Banana	cytosol	60.18	60.45
KRH68483	Soybean	cytosol	51.43	53.2
KRG96764	Soybean	cytosol	51.13	52.89
VIT_14s0060g01970.t01	Wine grape	cytosol, plastid	50.38	51.94
CDX88253	Canola	cytosol	49.47	51.25
CDX80608	Canola	cytosol	49.32	51.09
Bra009931.1-P	Field mustard	cytosol	49.32	51.09
CDY19741	Canola	cytosol	46.91	50.41
Bra036607.1-P	Field mustard	cytosol	48.57	50.39
AT5G27920.1	Thale cress	cytosol, extracellular, peroxisome	48.72	50.31
CDY53337	Canola	cytosol	48.27	50.08
PGSC0003DMT400063732	Potato	cytosol	47.21	48.83
Solyc01g099970.2.1	Tomato	extracellular	45.25	48.47
Zm00001d044622_P002	Maize	mitochondrion	40.57	38.21
Zm00001d005072_P003	Maize	mitochondrion	39.06	35.72
Zm00001d051219_P001	Maize	cytosol	20.21	32.13
Zm00001d007640_P001	Maize	cytosol	27.45	28.98
Zm00001d015974_P002	Maize	cytosol	13.12	24.3
Zm00001d007294_P001	Maize	cytosol	14.03	22.91
Zm00001d038224_P004	Maize	cytosol	12.37	22.28
Zm00001d015778_P001	Maize	cytosol	21.57	22.24
Zm00001d053642_P001	Maize	cytosol	21.72	22.12
Zm00001d019677_P001	Maize	cytosol	16.59	20.95
Zm00001d000224_P001	Maize	cytosol	12.97	19.86
Zm00001d036880_P003	Maize	cytosol	21.87	19.7
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	6.49	19.37
Zm00001d000408_P001	Maize	cytosol	21.57	19.25
Zm00001d003103_P001	Maize	plastid	14.18	18.08
Zm00001d037295_P001	Maize	mitochondrion	6.49	17.62
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	6.18	17.6
Zm00001d025812_P001	Maize	plastid	13.88	16.85
Zm00001d025808_P001	Maize	plastid	13.88	16.85

Protein Annotations

EnsemblPlants:Zm00001d041635_P002	EnsemblPlants:Zm00001d041635_T002	EnsemblPlantsGene:Zm00001d041635	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR44309	PANTHER:PTHR44309:SF2	PFAM:PF13516	ProteinID:ONM33415.1	SEG:seg	SMART:SM00367
SUPFAM:SSF52047	UniParc:UPI000221A50B	UniProt:A0A1D6MXG3	MapMan:35.1	:	:

Description

F-box family protein

Coordinates

chr3:-:130621558..130626835

Molecular Weight (calculated)

71328.6 Da

IEP (calculated)

7.661

GRAVY (calculated)

0.196

Length

663 amino acids

Sequence
(BLAST)

001: MSREAQKLDC ATGGGGGVGI GVLSLDLLGQ VLDRLREPRD RKACRLVSRA FERSEAAHRR ALRVLRREPL PRLLRAFPAL ERLDLSACAS LDDASLAAAV
101: AGAGGGLAGL RSVCLARANG VGWRGLEALV AACPKLEAVD LSHCVSAGDR EAAALAAAAG LRELRLDKCL AVTDMGLAKV AVGCPRLEKL SLKWCREISD
201: IGIDLLAKKC PELRSLNISY LKVGNGSLRS ISSLERLEEL AMVCCSCIDD EGLELLSKGS DSLQSVDVSR CDHVTSHGLA SLIDGRNFLQ KLYAADCLHE
301: IGQRFVSKLA TLKETLTTLK LDGLEVSDSL LEAIGESCNK LVEIGLSKCS GVTDEGISSL VARCSDLRTI DLTCCNLSTN NALDSIAGNC KMLECLRLES
401: CSLINEKGLK RIATCCPNLK EIDLTDCGVD DAALEHLAKC SELRVLKLGL CSSISDKGIA FISSNCGKLV ELDLYRCSSI TDDGLAALAN GCKRIKLLNL
501: CYCNKITDTG LGHLGSLEEL TNLELRCLVR ITGIGISSVA IGCKNLIELD LKRCYSVDDA GLWALARYAL NLRQLTISYC QVTGLGLCHL LSSLRCLQDI
601: KMVHLSWVSI EGFEIALRAA CGRLKKLKML CGLKTVLSPE LIQMLQACGC RIRWVNKPLV YKD

Best Arabidopsis Sequence Match ( AT5G27920.1 )
(BLAST)

001: MSTSPSILSV LSEDLLVRVY ECLDPPCRKT WRLISKDFLR VDSLTRTTIR ILRVEFLPTL LFKYPNLSSL DLSVCPKLDD DVVLRLALDG AISTLGIKSL
101: NLSRSTAVRA RGLETLARMC HALERVDVSH CWGFGDREAA ALSSATGLRE LKMDKCLSLS DVGLARIVVG CSNLNKISLK WCMEISDLGI DLLCKICKGL
201: KSLDVSYLKI TNDSIRSIAL LVKLEVLDMV SCPLIDDGGL QFLENGSPSL QEVDVTRCDR VSLSGLISIV RGHPDIQLLK ASHCVSEVSG SFLKYIKGLK
301: HLKTIWIDGA HVSDSSLVSL SSSCRSLMEI GLSRCVDVTD IGMISLARNC LNLKTLNLAC CGFVTDVAIS AVAQSCRNLG TLKLESCHLI TEKGLQSLGC
401: YSMLVQELDL TDCYGVNDRG LEYISKCSNL QRLKLGLCTN ISDKGIFHIG SKCSKLLELD LYRCAGFGDD GLAALSRGCK SLNRLILSYC CELTDTGVEQ
501: IRQLELLSHL ELRGLKNITG VGLAAIASGC KKLGYLDVKL CENIDDSGFW ALAYFSKNLR QINLCNCSVS DTALCMLMSN LSRVQDVDLV HLSRVTVEGF
601: EFALRACCNR LKKLKLLAPL RFLLSSELLE TLHARGCRIR WD

Arabidopsis Description

At5g27920 [Source:UniProtKB/TrEMBL;Acc:Q8GZ31]
SUBAcon: [peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.