Factsheet for Zm00001d003103_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26667	Sorghum	plastid	81.92	91.03
Zm00001d025808_P001	Maize	plastid	89.81	85.53
Zm00001d025812_P001	Maize	plastid	89.23	84.98
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	71.54	84.35
TraesCS2A01G359900.1	Wheat	cytosol	81.15	78.0
HORVU0Hr1G005070.1	Barley	plastid	81.73	76.16
GSMUA_Achr8P15580_001	Banana	cytosol	43.65	55.64
GSMUA_Achr9P11380_001	Banana	cytosol	47.69	55.36
PGSC0003DMT400008648	Potato	cytosol	15.38	47.9
Solyc04g078490.1.1	Tomato	cytosol	47.88	46.63
VIT_18s0001g09940.t01	Wine grape	plastid	48.08	46.21
Zm00001d019677_P001	Maize	cytosol	46.35	45.9
KRH15408	Soybean	plastid	48.27	45.72
CDY43846	Canola	plastid	44.42	44.94
Bra032213.1-P	Field mustard	plastid	44.42	44.94
CDY25663	Canola	plastid	44.23	44.75
AT1G47056.1	Thale cress	cytosol, plastid	43.85	44.02
KRH28425	Soybean	cytosol	44.23	43.73
CDX81326	Canola	cytosol	44.04	43.7
KRH77049	Soybean	cytosol	43.27	43.1
KRH05631	Soybean	plastid	46.54	42.98
CDY18646	Canola	cytosol	43.27	42.94
Bra037120.1-P	Field mustard	cytosol	43.27	42.78
CDX83114	Canola	cytosol	40.77	42.66
AT5G67250.1	Thale cress	cytosol	43.08	42.5
VIT_07s0129g01110.t01	Wine grape	plastid	45.96	42.45
CDX68575	Canola	cytosol	41.54	42.27
Solyc02g092990.1.1	Tomato	plastid	44.62	42.18
Bra029994.1-P	Field mustard	cytosol	41.35	42.07
KRH04530	Soybean	cytosol	43.27	41.74
PGSC0003DMT400064250	Potato	mitochondrion	44.04	41.64
AT3G50080.1	Thale cress	cytosol	41.73	41.57
AT4G07400.1	Thale cress	nucleus	44.23	41.52
PGSC0003DMT400053918	Potato	cytosol	43.46	41.17
Solyc03g044220.1.1	Tomato	cytosol	43.08	40.8
KRH57971	Soybean	cytosol	43.85	40.79
KRH52037	Soybean	cytosol	28.46	36.63
PGSC0003DMT400091765	Potato	cytosol	46.54	34.28
CDY01426	Canola	cytosol	45.0	21.61
CDY12824	Canola	nucleus	44.81	21.38
Zm00001d015974_P002	Maize	cytosol	13.27	19.27
KRH61346	Soybean	cytosol	25.77	19.2
Zm00001d051219_P001	Maize	cytosol	15.38	19.18
Zm00001d038224_P004	Maize	cytosol	13.08	18.48
Zm00001d007640_P001	Maize	cytosol	21.35	17.68
Zm00001d015778_P001	Maize	cytosol	20.38	16.49
Zm00001d000224_P001	Maize	cytosol	13.65	16.4
Zm00001d053642_P001	Maize	cytosol	20.19	16.13
Zm00001d037295_P001	Maize	mitochondrion	7.5	15.98
Zm00001d044622_P002	Maize	mitochondrion	21.35	15.77
Zm00001d005072_P003	Maize	mitochondrion	20.77	14.9
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	6.35	14.86
Zm00001d007294_P001	Maize	cytosol	11.54	14.78
Zm00001d023825_P001	Maize	cytosol	18.27	14.39
Zm00001d048695_P001	Maize	cytosol	17.69	14.2
Zm00001d041635_P002	Maize	cytosol	18.08	14.18
Zm00001d000408_P001	Maize	cytosol	20.0	14.0
Zm00001d036880_P003	Maize	cytosol	19.81	13.99
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	6.15	13.73

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	UniProt:A0A1D6E6K7	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_Cys-con_subtyp	ProteinID:ONM16082.1	PFAM:PF12937	PANTHER:PTHR44356	PANTHER:PTHR44356:SF4	SMART:SM00367
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000844AE2D	EnsemblPlantsGene:Zm00001d003103	EnsemblPlants:Zm00001d003103_P001	EnsemblPlants:Zm00001d003103_T001
SEG:seg	:	:	:	:	:

Description

F-box protein

Coordinates

chr2:+:32308213..32309775

Molecular Weight (calculated)

55261.1 Da

IEP (calculated)

8.455

GRAVY (calculated)

0.100

Length

520 amino acids

Sequence
(BLAST)

001: MSPPPLRLTA PMQIAAEDSG SDSSSSFAPP ARDYTQDLPD EILALVFASL SPTDRNACSL ACSRWMEVDA TTRHRLSLDA RAALGNAAPA LFARFTAVTK
101: LALRWARGSG ADSLSDYGAA AVATALPSGR LSRLKLRGLR QLSDAGLASL AAAAPAIRKL SVASCTFGPK AFVAVLQSCP LLEDLSVKRL RGLPDTAGAT
201: TSIAEDIKFP PASSLRSVCL KDLYSALCFV PLVASSPELR SLKILRCSGA WDLPLEVITA RAPGLVELHL EKLQVGDRGL AALSACANLE VLFLVKTPEC
301: TDSGIISVAE KCHRLRKLHV DGWRTNRIGD FGLMAVARGC PNLQELVLIG VNPTVLSLRM LGEHCRTLER LALCGCETVG DAEIICLAER WAALKKLCIK
401: GCPVSDRGME ALNGGCPSLV KVKLKRCRGV SYECIENLKV TRGGSFSISL DIVLEHDARS ASENGAQENG QAQITALTDQ MAGMDLPVNA AGAQSSTHTI
501: TRMRSVVSAL RRRFGNPPPP

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.