Factsheet for PGSC0003DMT400064250

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g092990.1.1	Tomato	plastid	96.18	96.18
PGSC0003DMT400053918	Potato	cytosol	72.73	72.86
VIT_07s0129g01110.t01	Wine grape	plastid	58.73	57.37
CDX83114	Canola	cytosol	51.64	57.14
PGSC0003DMT400008648	Potato	cytosol	17.27	56.89
Bra029994.1-P	Field mustard	cytosol	52.55	56.56
CDX68575	Canola	cytosol	52.55	56.56
AT5G67250.1	Thale cress	cytosol	53.64	55.98
KRH77049	Soybean	cytosol	52.91	55.75
CDX81326	Canola	cytosol	52.91	55.53
CDY18646	Canola	cytosol	52.91	55.53
KRH28425	Soybean	cytosol	52.73	55.13
Bra037120.1-P	Field mustard	cytosol	52.73	55.13
GSMUA_Achr3P28280_001	Banana	plastid	48.73	54.36
AT3G50080.1	Thale cress	cytosol	51.27	54.02
KRH04530	Soybean	cytosol	50.73	51.76
GSMUA_Achr2P05250_001	Banana	cytosol	45.09	51.03
GSMUA_Achr8P15580_001	Banana	cytosol	37.45	50.49
KRH57971	Soybean	cytosol	51.27	50.45
GSMUA_Achr9P11380_001	Banana	cytosol	40.73	50.0
GSMUA_Achr9P22570_001	Banana	plastid	39.82	49.77
GSMUA_Achr4P12920_001	Banana	plastid	46.0	49.51
TraesCS5B01G158800.1	Wheat	plastid	46.0	48.01
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	45.82	47.82
TraesCS5A01G161400.1	Wheat	cytosol, plastid	45.64	47.63
Zm00001d019677_P001	Maize	cytosol	44.55	46.67
OQU89081	Sorghum	cytosol	44.36	46.48
HORVU5Hr1G050420.1	Barley	plastid	45.45	45.29
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	36.0	44.9
Os04t0505700-01	Rice	cytosol, mitochondrion	33.82	44.82
KXG26667	Sorghum	plastid	37.64	44.23
Zm00001d003103_P001	Maize	plastid	41.64	44.04
PGSC0003DMT400091765	Potato	cytosol	55.64	43.34
Zm00001d025812_P001	Maize	plastid	41.64	41.94
Zm00001d025808_P001	Maize	plastid	41.45	41.76
TraesCS2A01G359900.1	Wheat	cytosol	40.91	41.59
HORVU0Hr1G005070.1	Barley	plastid	40.73	40.14
GSMUA_Achr9P18840_001	Banana	plastid	46.73	35.21
CDY01426	Canola	cytosol	54.0	27.42
CDY12824	Canola	nucleus	54.0	27.25
PGSC0003DMT400029999	Potato	cytosol	16.18	21.29
PGSC0003DMT400053176	Potato	cytosol	14.36	20.26
PGSC0003DMT400007545	Potato	cytosol	22.91	19.78
PGSC0003DMT400079115	Potato	cytosol	21.27	19.28
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	11.82	19.06
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	22.18	19.0
PGSC0003DMT400074998	Potato	cytosol	11.64	18.5
PGSC0003DMT400042949	Potato	cytosol	17.82	17.75
PGSC0003DMT400040977	Potato	nucleus	21.45	17.64
PGSC0003DMT400094835	Potato	cytosol	7.82	17.55
PGSC0003DMT400089433	Potato	mitochondrion	14.55	17.43
PGSC0003DMT400063732	Potato	cytosol	19.64	16.85
PGSC0003DMT400030966	Potato	cytosol, plasma membrane, plastid	20.0	16.54
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	6.36	15.77
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	6.18	14.59
Zm00001d037295_P001	Maize	mitochondrion	6.0	13.52

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102605238	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M1CC09	PFAM:PF12937	EnsemblPlantsGene:PGSC0003DMG400024958	PGSC:PGSC0003DMG400024958	EnsemblPlants:PGSC0003DMT400064250
PANTHER:PTHR44356	PANTHER:PTHR44356:SF2	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000294E984
RefSeq:XP_006339852.1	:	:	:	:	:

Description

Avr9/Cf-9 rapidly elicited protein 189 [Source:PGSC_GENE;Acc:PGSC0003DMG400024958]

Coordinates

chr2:+:43366844..43368970

Molecular Weight (calculated)

59645.8 Da

IEP (calculated)

8.215

GRAVY (calculated)

-0.153

Length

550 amino acids

Sequence
(BLAST)

001: MGQYSSTHCG GGPKHRHRSL HPTSLPNHHR SASDHSQSDF FSLMNSDEDE SPIPFVFGNR DYTDDLPDEC LALIFQCLSS GDRKKCSLVS RRWLLVEGQS
101: HHRLALNAKV EILPHVPTIF TRFDSVTKLA LRCDRKSVSI NDEALTLISL RCSKLIRLKL RGCRDVTEVG MSAFARNCKS LKKFSCGSCM FGAKGMNALL
201: DNCSSLEELS VKRLRGINDG FAADPIGPGA AASSLKSICL KELYNGQCFA PLITGSKNLK TLKLLRCLGD WDRLFETIGS RENHVSEIHL ERLQVGDTGL
301: TAISNCPKLE ILHLVKTPEC TDAGVVAVAS KCKLLRKLHI DGWRTNRIGD EGLVAIAENS SNLKELVLIG LNPTSTSLLA IASNCKKLER LALCGSDTIG
401: DPEVSCIATK CMALKKLCIK GCEVTDQGIE SFAWGCPNLV KIKVKKCKHV TGDVADRLRA RRQSLAVNLD GGEIDIEPVD SSASDGGAIE EAAEFQHTAA
501: TLPIIGASDI PSTSNVGRSS ASKPWFGIFG GRGLVACTLR RWSNGNGESL

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.