Factsheet for PGSC0003DMT400053176

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g007680.1.1	Tomato	cytosol	96.41	94.0
KRH47976	Soybean	cytosol	56.15	56.44
AT3G07550.2	Thale cress	cytosol	55.9	55.19
Bra029656.1-P	Field mustard	cytosol	53.59	52.91
CDY35942	Canola	cytosol	52.82	52.15
CDY28039	Canola	cytosol	52.05	52.05
GSMUA_Achr8P28940_001	Banana	cytosol	48.46	49.74
Os11t0264200-01	Rice	cytosol	46.67	47.77
TraesCS4D01G083300.1	Wheat	cytosol	44.62	45.08
HORVU4Hr1G014630.1	Barley	cytosol	44.1	44.56
EES09509	Sorghum	cytosol	42.82	43.26
TraesCS4B01G085300.2	Wheat	plastid	41.28	39.75
TraesCS4A01G230600.2	Wheat	plastid	40.77	39.26
Zm00001d007294_P001	Maize	cytosol	39.74	38.18
PGSC0003DMT400029999	Potato	cytosol	23.85	22.25
PGSC0003DMT400094835	Potato	cytosol	12.05	19.18
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	14.36	16.42
PGSC0003DMT400079115	Potato	cytosol	25.13	16.14
PGSC0003DMT400063732	Potato	cytosol	24.1	14.66
PGSC0003DMT400064250	Potato	mitochondrion	20.26	14.36
PGSC0003DMT400053918	Potato	cytosol	19.74	14.03
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	23.08	14.02
PGSC0003DMT400089433	Potato	mitochondrion	16.15	13.73
PGSC0003DMT400007545	Potato	cytosol	22.31	13.66
PGSC0003DMT400030966	Potato	cytosol, plasma membrane, plastid	22.82	13.38
PGSC0003DMT400074998	Potato	cytosol	11.28	12.72
PGSC0003DMT400040977	Potato	nucleus	21.79	12.71
PGSC0003DMT400008648	Potato	cytosol	5.38	12.57
PGSC0003DMT400042949	Potato	cytosol	16.92	11.96
PGSC0003DMT400091765	Potato	cytosol	20.26	11.19

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102587561	Gene3D:3.80.10.10	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M1BUJ2	PFAM:PF00646	PFAM:PF13516
EnsemblPlantsGene:PGSC0003DMG400020641	PGSC:PGSC0003DMG400020641	EnsemblPlants:PGSC0003DMT400053176	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0002968DC3	RefSeq:XP_006344101.1	RefSeq:XP_015162697.1	:	:	:

Description

Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400020641]

Coordinates

chr6:-:2570398..2574852

Molecular Weight (calculated)

43564.7 Da

IEP (calculated)

7.981

GRAVY (calculated)

0.031

Length

390 amino acids

Sequence
(BLAST)

001: MDNPSDDFSG YIMQLPDDCL LFIFQHLDCG SDRESFGLTC RRWLQIQNLN RRSLQFQCSF TMLNFSSLSQ TNTRISTLHL YRLLNRFQNL ESLSLSGCTE
101: LPDSGLSLLP RHGSKLQSLH LDCCFGITDS GLSCVASGCS LLVILSLYRC NVTDYGLEAL SNSCLALEDL NLSYCSRISD YGVRAISQNC RRLRAIRISY
201: CRNLTGAGFQ GCSQTLTHLE ADYCRLEPNG IRSILSGGGI EYLSVSNLTW CTRVNGLVVI SVGFAAKLRV LNFRSSRTIG DDCIMTIAKG CPSLQEWNLA
301: ICHEVKIAGW ESIASHCHNL KTLHVNRCRN LCDRGLQALR NGCKRLSILY ITRSSQISGV ALEIFKLVRG NVEVKEEEVM CICPHGAFRF

Best Arabidopsis Sequence Match ( AT3G07550.2 )
(BLAST)

001: MEDVSESDNN VETSIIHLPD DCLSFIFQRL DSVADHDSFG LTCHRWLNIQ NISRRSLQFQ CSFSVLNPSS LSQTNPDVSS HHLHRLLTRF QWLEHLSLSG
101: CTVLNDSSLD SLRYPGARLH TLYLDCCFGI SDDGISTIAS FCPNLSVVSL YRCNISDIGL ETLARASLSL KCVNLSYCPL VSDFGIKALS QACLQLESVK
201: ISNCKSITGV GFSGCSPTLG YVDADSCQLE PKGITGIISG GGIEFLNISG VSCYIRKDGL VPIGSGIASK LRILNLRMCR TVGDESIEAI AKGCPLLQEW
301: NLALCHEVKI SGWEAVGKWC RNLKKLHVNR CRNLCDQGLL ALRCGCMNLQ ILYMNGNARL TPTAIEMFRL HRADITLRTE EMMVIGPDWR LYAQE

Arabidopsis Description

FBL12F-box/LRR-repeat protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.