Factsheet for PGSC0003DMT400079115

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g054440.2.1	Tomato	mitochondrion	85.34	96.82
VIT_05s0020g02400.t01	Wine grape	cytosol	75.62	75.12
KRH02152	Soybean	cytosol	70.68	73.46
KRH20947	Soybean	cytosol, nucleus, peroxisome	71.5	71.5
AT4G15475.1	Thale cress	cytosol	67.87	67.54
KRH11333	Soybean	cytosol	42.17	65.47
CDY09760	Canola	cytosol	67.38	65.23
CDX90588	Canola	cytosol	67.55	65.18
Bra012785.1-P	Field mustard	cytosol	67.05	64.81
KRH50979	Soybean	cytosol	36.24	62.68
GSMUA_Achr3P22880_001	Banana	cytosol	62.93	59.69
Zm00001d007640_P001	Maize	cytosol	51.07	49.36
EES08900	Sorghum	cytosol	50.41	48.19
TraesCS4D01G148000.1	Wheat	cytosol	49.42	48.0
TraesCS4A01G142500.3	Wheat	plastid	46.29	44.67
Os11t0641200-01	Rice	cytosol	25.7	43.58
Os10t0148800-01	Rice	cytosol	28.17	34.34
PGSC0003DMT400029999	Potato	cytosol	18.78	27.27
PGSC0003DMT400053176	Potato	cytosol	16.14	25.13
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	14.0	24.93
PGSC0003DMT400063732	Potato	cytosol	26.19	24.8
PGSC0003DMT400008648	Potato	cytosol	6.59	23.95
PGSC0003DMT400030966	Potato	cytosol, plasma membrane, plastid	26.03	23.76
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	24.71	23.36
PGSC0003DMT400074998	Potato	cytosol	13.18	23.12
PGSC0003DMT400007545	Potato	cytosol	23.72	22.61
PGSC0003DMT400040977	Potato	nucleus	24.22	21.97
PGSC0003DMT400042949	Potato	cytosol	19.6	21.56
PGSC0003DMT400064250	Potato	mitochondrion	19.28	21.27
PGSC0003DMT400089433	Potato	mitochondrion	15.98	21.13
PGSC0003DMT400053918	Potato	cytosol	18.78	20.77
PGSC0003DMT400094835	Potato	cytosol	8.07	20.0
PGSC0003DMT400091765	Potato	cytosol	18.95	16.29

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102605788	Gene3D:3.80.10.10	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M1D196	PFAM:PF12937	PFAM:PF13516
EnsemblPlantsGene:PGSC0003DMG400030790	PGSC:PGSC0003DMG400030790	EnsemblPlants:PGSC0003DMT400079115	PANTHER:PTHR45517	SMART:SM00367	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0002961A20	RefSeq:XP_006356687.1	SEG:seg	:	:

Description

TRANSPORT INHIBITOR RESPONSE 1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030790]

Coordinates

chr6:+:40777592..40786618

Molecular Weight (calculated)

65665.1 Da

IEP (calculated)

7.380

GRAVY (calculated)

0.231

Length

607 amino acids

Sequence
(BLAST)

001: MRGRDWINQI LPDELILDIF RHLESKSSRD ACALVCKRWL RLERLSRLTL RIGASGCPDV FIKLLARRFV NVRNVFVDER LSISLPVPLG RRRGTDHSVI
101: SALKIHSLAE TNGSEDNETE SYCLSDAGLA AVAAGFSKLE KLSLIWCSNV THVGLRSIAE KCIFLKSLDL QGCYVGDQGL AAVGEFSKQL EDLNLRFCEG
201: LTDAGLIKLV DGSGKTLKSI SLAACAKVTD TSLEAVGSHC RSLESLSLDS ECIHDKGVLA VAQGCPQLKV LKLQCVNVTD GALQGVGTCC LSLELLALYS
301: FQIFTDKSLY AIGKGCKRLK SLTLNDCTFL SDKGLEAVAV GCTGLTYLEV NGCHNIGTYG LESIARSCTH LSELALLYCQ RIGNFALSEI GKGCKFLQAL
401: HLVDCASIGD EAICSIARGC CNLKRLHIRR CYEVGNKGII AVGENCKFLT DLSLRFCDRV GDEALVAIGE GCSLHHLNVS GCHQIGDAGI IAIARGCPEL
501: SYLDVSVLQD LGDMAMVELG EGCPLLRDIV LSHCRQITDV GLSYIANRCT LLETSHMVYC PGITAAGVAT VITSCTNIKK VLVEKWKVSP RTKRRAGSII
601: SYLCVDL

Best Arabidopsis Sequence Match ( AT4G15475.1 )
(BLAST)

001: MRGHDRINNC LPEELILEIF RRLESKPNRD ACSLVCKRWL SLERFSRTTL RIGASFSPDD FISLLSRRFL YITSIHVDER ISVSLPSLSP SPKRKRGRDS
101: SSPSSSKRKK LTDKTHSGAE NVESSSLTDT GLTALANGFP RIENLSLIWC PNVSSVGLCS LAQKCTSLKS LDLQGCYVGD QGLAAVGKFC KQLEELNLRF
201: CEGLTDVGVI DLVVGCSKSL KSIGVAASAK ITDLSLEAVG SHCKLLEVLY LDSEYIHDKG LIAVAQGCHR LKNLKLQCVS VTDVAFAAVG ELCTSLERLA
301: LYSFQHFTDK GMRAIGKGSK KLKDLTLSDC YFVSCKGLEA IAHGCKELER VEINGCHNIG TRGIEAIGKS CPRLKELALL YCQRIGNSAL QEIGKGCKSL
401: EILHLVDCSG IGDIAMCSIA KGCRNLKKLH IRRCYEIGNK GIISIGKHCK SLTELSLRFC DKVGNKALIA IGKGCSLQQL NVSGCNQISD AGITAIARGC
501: PQLTHLDISV LQNIGDMPLA ELGEGCPMLK DLVLSHCHHI TDNGLNHLVQ KCKLLETCHM VYCPGITSAG VATVVSSCPH IKKVLIEKWK VTERTTRRAG
601: SVISYLCMDL

Arabidopsis Description

FBL4F-box/LRR-repeat protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5D2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.