Factsheet for PGSC0003DMT400030966

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, plastid

Predictor Summary:

plastid 2
cytosol 1
nucleus 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g076290.1.1	Tomato	cytosol	96.69	95.26
VIT_08s0058g00700.t01	Wine grape	cytosol	74.59	74.81
KRH76059	Soybean	cytosol, nucleus, peroxisome	66.32	65.72
AT5G01720.1	Thale cress	vacuole	63.31	63.31
KRH65525	Soybean	cytosol, peroxisome, plastid	66.92	62.85
Bra005669.1-P	Field mustard	cytosol	61.2	60.93
CDY11182	Canola	cytosol, endoplasmic reticulum, nucleus	61.5	60.5
CDX80753	Canola	endoplasmic reticulum	60.3	59.32
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	60.45	56.3
GSMUA_Achr7P22290_001	Banana	cytosol	60.45	56.15
Os12t0108500-01	Rice	cytosol, plasma membrane, plastid	53.68	51.22
TraesCS5A01G150800.2	Wheat	mitochondrion	52.33	51.03
TraesCS5B01G149400.1	Wheat	mitochondrion	52.18	50.88
HORVU5Hr1G047420.2	Barley	cytosol, mitochondrion, plastid	51.58	50.81
Zm00001d044622_P002	Maize	mitochondrion	53.53	50.57
KXG22793	Sorghum	nucleus	52.78	50.43
EES07863	Sorghum	nucleus	52.33	50.36
TraesCS5D01G155900.1	Wheat	mitochondrion	52.18	50.07
Zm00001d005072_P003	Maize	mitochondrion	52.18	47.86
Os11t0108932-01	Rice	nucleus	20.9	44.55
PGSC0003DMT400063732	Potato	cytosol	37.44	38.85
PGSC0003DMT400029999	Potato	cytosol	18.35	29.19
PGSC0003DMT400094835	Potato	cytosol	10.23	27.76
PGSC0003DMT400089433	Potato	mitochondrion	18.05	26.14
PGSC0003DMT400079115	Potato	cytosol	23.76	26.03
PGSC0003DMT400074998	Potato	cytosol	12.78	24.57
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	12.33	24.05
PGSC0003DMT400007545	Potato	cytosol	23.01	24.02
PGSC0003DMT400040977	Potato	nucleus	23.76	23.62
PGSC0003DMT400042949	Potato	cytosol	19.25	23.19
PGSC0003DMT400053176	Potato	cytosol	13.38	22.82
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	21.95	22.74
PGSC0003DMT400008648	Potato	cytosol	5.56	22.16
PGSC0003DMT400053918	Potato	cytosol	16.99	20.58
PGSC0003DMT400064250	Potato	mitochondrion	16.54	20.0
PGSC0003DMT400091765	Potato	cytosol	16.39	15.44

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M1AV08
PFAM:PF13516	EnsemblPlantsGene:PGSC0003DMG400011864	PGSC:PGSC0003DMG400011864	EnsemblPlants:PGSC0003DMT400030966	PANTHER:PTHR44309	PANTHER:PTHR44309:SF1
SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002967053	SEG:seg	:

Description

F-box protein, atfbl3 [Source:PGSC_GENE;Acc:PGSC0003DMG400011864]

Coordinates

chr10:+:49465811..49472205

Molecular Weight (calculated)

72345.7 Da

IEP (calculated)

7.455

GRAVY (calculated)

0.197

Length

665 amino acids

Sequence
(BLAST)

001: MKKQKPISGT HFNPFDLLSE EIVFSVLDCL NDNPLDKKSF SLVCKSFYAI ESHHRKILKP FRPEHLTKVL SRYPQVTHLD LSLCPRITDG SLTVIANFCK
101: EMLRSINLSR SKFFTHVGLS NLVMNCGNLV EIDLSNATEL KDVGAAALAE AKNLEKLWLV RCKSLTDIGL GCIAVGCRKL RLLSLRWCLG VGDLGVGLIA
201: VKCKEIRSLD LSYLPITNEC LSSISKLQYL EDLVLEGCYG IDDDSLASLE QGCQSLEKLD MSSCQNVSHV GLSSLTSCAG CLRQLVLSYG SPVTPAVADS
301: LQKLSRLQCV KLDGCQVTCS GLKAIGNWCV SLKELSLSKC VGVTDEGLCS LVTKHKDLGK LDITCCRKIT CVSISHITNS CASLTSLRME SCTLVPREAF
401: VLIGQRCQYL EELDLTDNEI DDEGLKTISK CASLSSLKLG ICLNITDQGL IHIGMCCSNL KELDLYRSAG ISDLGILAIS RGCIGLEMIN IAYCNRITDG
501: SFISISKCSK LNTLESRGCP LVTSLGLAAV AVGCKQLTTL DIKNCHNIDD AGMIPLAHFS TNLKQINLSF TSVTDVGLLS LSSISGLQNM TILHLKGLSP
601: GGLGAALLAC GGLTKVKLQT SFKSLLPQPL LQHLESRGCV FQWREKPFQA EVDPIYWKIQ LDNLD

Best Arabidopsis Sequence Match ( AT5G01720.1 )
(BLAST)

001: MKKVKQIRVL KPFDLLSEEL VFIILDLISP NPSDLKSFSL TCKSFYQLES KHRGSLKPLR SDYLPRILTR YRNTTDLDLT FCPRVTDYAL SVVGCLSGPT
101: LRSLDLSRSG SFSAAGLLRL ALKCVNLVEI DLSNATEMRD ADAAVVAEAR SLERLKLGRC KMLTDMGIGC IAVGCKKLNT VSLKWCVGVG DLGVGLLAVK
201: CKDIRTLDLS YLPITGKCLH DILKLQHLEE LLLEGCFGVD DDSLKSLRHD CKSLKKLDAS SCQNLTHRGL TSLLSGAGYL QRLDLSHCSS VISLDFASSL
301: KKVSALQSIR LDGCSVTPDG LKAIGTLCNS LKEVSLSKCV SVTDEGLSSL VMKLKDLRKL DITCCRKLSR VSITQIANSC PLLVSLKMES CSLVSREAFW
401: LIGQKCRLLE ELDLTDNEID DEGLKSISSC LSLSSLKLGI CLNITDKGLS YIGMGCSNLR ELDLYRSVGI TDVGISTIAQ GCIHLETINI SYCQDITDKS
501: LVSLSKCSLL QTFESRGCPN ITSQGLAAIA VRCKRLAKVD LKKCPSINDA GLLALAHFSQ NLKQINVSDT AVTEVGLLSL ANIGCLQNIA VVNSSGLRPS
601: GVAAALLGCG GLRKAKLHAS LRSLLPLSLI HHLEARGCAF LWKDNTLQAE LDPKYWKQQL EEMAP

Arabidopsis Description

FBL3F-box/LRR-repeat protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU5]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.