Factsheet for PGSC0003DMT400074998

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g005380.2.1	Tomato	cytosol	97.4	97.4
VIT_08s0007g07030.t01	Wine grape	cytosol	71.68	70.86
CDX71945	Canola	cytosol	69.65	68.27
CDY06032	Canola	cytosol	68.5	67.14
GSMUA_Achr2P17760_001	Banana	cytosol	68.21	66.67
Bra007401.1-P	Field mustard	cytosol	46.82	65.85
AT3G58530.1	Thale cress	cytosol	66.19	64.87
EES04933	Sorghum	cytosol	65.32	64.76
HORVU3Hr1G012530.12	Barley	cytosol	63.01	62.11
Os02t0281150-01	Rice	cytosol	63.87	62.08
TraesCS3D01G067600.2	Wheat	cytosol	62.72	62.0
TraesCS3B01G080300.1	Wheat	cytosol	62.72	61.82
TraesCS3A01G067800.1	Wheat	cytosol	62.14	61.25
Zm00001d015974_P002	Maize	cytosol	62.43	60.34
KRH38032	Soybean	cytosol	65.9	60.32
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	17.05	17.3
PGSC0003DMT400029999	Potato	cytosol	19.94	16.51
PGSC0003DMT400063732	Potato	cytosol	25.43	13.73
PGSC0003DMT400089433	Potato	mitochondrion	18.21	13.73
PGSC0003DMT400042949	Potato	cytosol	21.1	13.22
PGSC0003DMT400007545	Potato	cytosol	24.28	13.19
PGSC0003DMT400079115	Potato	cytosol	23.12	13.18
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	24.28	13.08
PGSC0003DMT400040977	Potato	nucleus	25.14	13.0
PGSC0003DMT400030966	Potato	cytosol, plasma membrane, plastid	24.57	12.78
PGSC0003DMT400064250	Potato	mitochondrion	18.5	11.64
PGSC0003DMT400008648	Potato	cytosol	5.49	11.38
PGSC0003DMT400053176	Potato	cytosol	12.72	11.28
PGSC0003DMT400053918	Potato	cytosol	16.76	10.56
PGSC0003DMT400094835	Potato	cytosol	6.94	9.8
PGSC0003DMT400091765	Potato	cytosol	19.36	9.49

Protein Annotations

EnsemblPlants:PGSC0003DMT400074998	EnsemblPlantsGene:PGSC0003DMG400029168	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	InterPro:IPR001611
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF13516	PGSC:PGSC0003DMG400029168
SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI00029698F1	UniProt:M1CUH3	MapMan:35.1	:

Description

Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400029168]

Coordinates

chr6:-:5784054..5793112

Molecular Weight (calculated)

38815.5 Da

IEP (calculated)

7.725

GRAVY (calculated)

0.124

Length

346 amino acids

Sequence
(BLAST)

001: MAAETIWNRE TVPKVMKIVS TRLQQRDLIT LLLASPSIHR TLLSHPSLWL VLDFHEMSNA GDRLVSALSL PRYRNVKHIN LEFAQDIEDK QLENVKSKCG
101: DSLLDLEILN LNGCQRISDK GIEVVTNTCP KLKVFSIYWN VRVTDVGITH LVKNCRFVVD LNLSGCKNIT DKSLHLVADN YQELESLNIT RCIKMTDSGL
201: QRILLNCSSL QTLNLYALST LTDEAYKMIS RLPHLRFLDL CGAQNLTDDG LSCIAMCKNL VSLNLTWCVQ VSDVGVIAIA QGCRSLELLS LFGILGVSDR
301: CLEVLSSFCS NTLTTLDVNG CINIKNRSRD QLLKLFPNLM CFKVHS

Best Arabidopsis Sequence Match ( AT3G58530.1 )
(BLAST)

001: MEAKKVTEEE EETWRREIVT SVMRLVSTRL PQTDLISLLL VSPWLYRTLI SYPSIWLTIN LREMTNAGDR LLAALSLPRY RQVKHINLEF AQGVVDSHLK
101: LVKTECPDAL LSLEWLNLNV CQKISDNGIE AITSICPKLK VFSIYWNVRV TDAGIRNLVK NCRHITDLNL SGCKSLTDKS MQLVAESYPD LESLNITRCV
201: KITDDGLLQV LQKCFSLQTL NLYALSGFTD KAYMKISLLA DLRFLDICGA QNISDEGIGH IAKCNKLESL NLTWCVRITD AGVNTIANSC TSLEFLSLFG
301: IVGVTDRCLE TLSQTCSTTL TTLDVNGCTG IKRRSREELL QMFPRLTCFK VHS

Arabidopsis Description

F-box protein At3g58530 [Source:UniProtKB/Swiss-Prot;Acc:Q8LB33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.