Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400074998 | Potato | cytosol | 66.67 | 68.21 |
| Solyc06g005380.2.1 | Tomato | cytosol | 65.54 | 67.05 |
| EES04933 | Sorghum | cytosol | 65.54 | 66.48 |
| Os02t0281150-01 | Rice | cytosol | 66.67 | 66.29 |
| HORVU3Hr1G012530.12 | Barley | cytosol | 65.54 | 66.1 |
| TraesCS3D01G067600.2 | Wheat | cytosol | 65.25 | 66.0 |
| TraesCS3B01G080300.1 | Wheat | cytosol | 65.25 | 65.81 |
| TraesCS3A01G067800.1 | Wheat | cytosol | 64.12 | 64.67 |
| VIT_08s0007g07030.t01 | Wine grape | cytosol | 62.99 | 63.71 |
| Zm00001d015974_P002 | Maize | cytosol | 63.56 | 62.85 |
| CDX71945 | Canola | cytosol | 62.15 | 62.32 |
| CDY06032 | Canola | cytosol | 61.86 | 62.04 |
| AT3G58530.1 | Thale cress | cytosol | 60.73 | 60.91 |
| Bra007401.1-P | Field mustard | cytosol | 42.09 | 60.57 |
| KRH38032 | Soybean | cytosol | 59.89 | 56.08 |
| GSMUA_Achr10P... | Banana | cytosol | 17.8 | 17.75 |
| GSMUA_Achr6P18620_001 | Banana | cytosol | 18.08 | 17.44 |
| GSMUA_Achr8P13910_001 | Banana | mitochondrion | 16.38 | 16.38 |
| GSMUA_Achr5P19410_001 | Banana | cytosol | 19.49 | 16.24 |
| GSMUA_AchrUn_... | Banana | cytosol | 16.67 | 16.03 |
| GSMUA_Achr8P15580_001 | Banana | cytosol | 16.67 | 14.46 |
| GSMUA_Achr9P11380_001 | Banana | cytosol | 18.08 | 14.29 |
| GSMUA_Achr2P05250_001 | Banana | cytosol | 19.49 | 14.2 |
| GSMUA_Achr9P28510_001 | Banana | cytosol, nucleus, peroxisome | 25.42 | 13.76 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 25.71 | 13.62 |
| GSMUA_Achr8P28940_001 | Banana | cytosol | 14.41 | 13.42 |
| GSMUA_Achr4P30680_001 | Banana | cytosol | 24.01 | 13.04 |
| GSMUA_Achr3P28280_001 | Banana | plastid | 18.08 | 12.98 |
| GSMUA_Achr6P20450_001 | Banana | cytosol | 24.01 | 12.88 |
| GSMUA_Achr6P05220_001 | Banana | cytosol | 23.45 | 12.69 |
| GSMUA_Achr3P22880_001 | Banana | cytosol | 22.88 | 12.66 |
| GSMUA_Achr11P... | Banana | cytosol | 23.45 | 12.65 |
| GSMUA_Achr7P22290_001 | Banana | cytosol | 25.14 | 12.43 |
| GSMUA_Achr4P12920_001 | Banana | plastid | 17.8 | 12.33 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 24.86 | 12.32 |
| GSMUA_Achr2P15920_001 | Banana | cytosol, peroxisome, plastid | 23.16 | 12.28 |
| GSMUA_Achr9P22570_001 | Banana | plastid | 15.25 | 12.27 |
| GSMUA_Achr9P18840_001 | Banana | plastid | 18.93 | 9.18 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | EnsemblPlantsGene:GSMUA_Achr2G17760_001 | EnsemblPlants:GSMUA_Achr2P17760_001 |
| EnsemblPlants:GSMUA_Achr2T17760_001 | InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp |
| UniProt:M0S8W7 | PFAM:PF13516 | PANTHER:PTHR44001 | SMART:SM00367 | SUPFAM:SSF52047 | UniParc:UPI00029531A2 |
Description
F-box protein At3g58530 [Source:GMGC_GENE;Acc:GSMUA_Achr2G17760_001]
Coordinates
chr2:+:18179341..18184990
Molecular Weight (calculated)
39613.4 Da
IEP (calculated)
7.718
GRAVY (calculated)
0.103
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAGGDWERE TVPRVMAIVS PRLPQRDVYS VLMVSPWCYR AFLSVPTLWE VLDLHEMSKA GERLISALSL VRYEHIKKIT LEFAQEVEDE HLILLKSQRT
101: ETTLRDLQHL NLNGCQKISD KGIEAITACC PNLRSLSVYW NVRLTDLGIK HLVKNSREVV SLNLSGCKNI TDHSLYLIAD SYHGLEELDI TRCTKLTDSG
201: LQQILLKCFS LRSLNLYALS RQALKITILT DAAYEKIGCL AHLTFLDLCG AQNLSDQGLS CIARCKHLVS LNLTWCVRVT DVGVAAIAEG CRSLELLSLY
301: GIVGVTDKCL EALSNFCSNT LTTLDVNGCV GIKKRSRDDL LKQFPLLRCF KVHS
101: ETTLRDLQHL NLNGCQKISD KGIEAITACC PNLRSLSVYW NVRLTDLGIK HLVKNSREVV SLNLSGCKNI TDHSLYLIAD SYHGLEELDI TRCTKLTDSG
201: LQQILLKCFS LRSLNLYALS RQALKITILT DAAYEKIGCL AHLTFLDLCG AQNLSDQGLS CIARCKHLVS LNLTWCVRVT DVGVAAIAEG CRSLELLSLY
301: GIVGVTDKCL EALSNFCSNT LTTLDVNGCV GIKKRSRDDL LKQFPLLRCF KVHS
001: MEAKKVTEEE EETWRREIVT SVMRLVSTRL PQTDLISLLL VSPWLYRTLI SYPSIWLTIN LREMTNAGDR LLAALSLPRY RQVKHINLEF AQGVVDSHLK
101: LVKTECPDAL LSLEWLNLNV CQKISDNGIE AITSICPKLK VFSIYWNVRV TDAGIRNLVK NCRHITDLNL SGCKSLTDKS MQLVAESYPD LESLNITRCV
201: KITDDGLLQV LQKCFSLQTL NLYALSGFTD KAYMKISLLA DLRFLDICGA QNISDEGIGH IAKCNKLESL NLTWCVRITD AGVNTIANSC TSLEFLSLFG
301: IVGVTDRCLE TLSQTCSTTL TTLDVNGCTG IKRRSREELL QMFPRLTCFK VHS
101: LVKTECPDAL LSLEWLNLNV CQKISDNGIE AITSICPKLK VFSIYWNVRV TDAGIRNLVK NCRHITDLNL SGCKSLTDKS MQLVAESYPD LESLNITRCV
201: KITDDGLLQV LQKCFSLQTL NLYALSGFTD KAYMKISLLA DLRFLDICGA QNISDEGIGH IAKCNKLESL NLTWCVRITD AGVNTIANSC TSLEFLSLFG
301: IVGVTDRCLE TLSQTCSTTL TTLDVNGCTG IKRRSREELL QMFPRLTCFK VHS
Arabidopsis Description
F-box protein At3g58530 [Source:UniProtKB/Swiss-Prot;Acc:Q8LB33]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.