Factsheet for GSMUA_Achr8P28940_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0264200-01	Rice	cytosol	52.37	52.23
TraesCS4D01G083300.1	Wheat	cytosol	52.89	52.07
HORVU4Hr1G014630.1	Barley	cytosol	52.37	51.55
AT3G07550.2	Thale cress	cytosol	50.79	48.86
PGSC0003DMT400053176	Potato	cytosol	49.74	48.46
EES09509	Sorghum	cytosol	48.68	47.93
KRH47976	Soybean	cytosol	48.68	47.68
Solyc06g007680.1.1	Tomato	cytosol	49.74	47.25
CDY35942	Canola	cytosol	48.68	46.84
CDY28039	Canola	cytosol	47.89	46.67
Bra029656.1-P	Field mustard	cytosol	48.42	46.58
TraesCS4B01G085300.2	Wheat	plastid	47.37	44.44
TraesCS4A01G230600.2	Wheat	plastid	47.11	44.2
Zm00001d007294_P001	Maize	cytosol	43.68	40.89
GSMUA_Achr10P...	Banana	cytosol	17.63	18.87
GSMUA_Achr5P19410_001	Banana	cytosol	21.05	18.82
GSMUA_Achr6P18620_001	Banana	cytosol	17.63	18.26
GSMUA_AchrUn_...	Banana	cytosol	17.63	18.21
GSMUA_Achr8P15580_001	Banana	cytosol	18.68	17.4
GSMUA_Achr8P13910_001	Banana	mitochondrion	15.79	16.95
GSMUA_Achr9P11380_001	Banana	cytosol	19.47	16.52
GSMUA_Achr3P22880_001	Banana	cytosol	26.32	15.62
GSMUA_Achr6P20450_001	Banana	cytosol	25.26	14.55
GSMUA_Achr2P17760_001	Banana	cytosol	13.42	14.41
GSMUA_Achr2P05250_001	Banana	cytosol	18.42	14.4
GSMUA_Achr11P...	Banana	cytosol	24.74	14.33
GSMUA_Achr6P05220_001	Banana	cytosol	23.68	13.76
GSMUA_Achr3P28280_001	Banana	plastid	17.63	13.59
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	23.42	13.32
GSMUA_Achr4P30680_001	Banana	cytosol	22.63	13.19
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	24.21	12.89
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	22.11	12.84
GSMUA_Achr4P12920_001	Banana	plastid	17.11	12.72
GSMUA_Achr7P22290_001	Banana	cytosol	23.95	12.71
GSMUA_Achr9P22570_001	Banana	plastid	13.68	11.82
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	19.21	10.93
GSMUA_Achr9P18840_001	Banana	plastid	18.42	9.59

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.80.10.10	MapMan:35.1	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr8G28940_001	EnsemblPlants:GSMUA_Achr8P28940_001	EnsemblPlants:GSMUA_Achr8T28940_001	InterPro:IPR001611	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M0TUJ7	PFAM:PF13516	PANTHER:PTHR44001
SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002964BAD	:	:

Description

F-box/LRR-repeat protein 12 [Source:GMGC_GENE;Acc:GSMUA_Achr8G28940_001]

Coordinates

chr8:-:31538750..31539892

Molecular Weight (calculated)

42394.7 Da

IEP (calculated)

7.934

GRAVY (calculated)

0.113

Length

380 amino acids

Sequence
(BLAST)

001: MDGQFERVNL YLPDDCLLMI FQKLQNRADR NAFGLTCHRW LQIQNIAQRS LALQFSYDPN IYRNYVIYLP RLLTRFPHLS SISLAGCTEL PDSALLRLRD
101: FGSNIRYLSL YCCFGISEHG LAHVSTGCPH LVSITLYRCN ITDIGLRILA KHCKVLENID LSYCMQISDR GINALSSECT KLHCLVISYC KAVRGIGFAG
201: CSSTLTYLEA DSCMLTPEGL SEAVSGGGLE YLNISNPRIC VGADGLAMIG AGSATKLRYL NLRMCRFVSD DSVIAIAQGC PLLEEWSLSV CHEVRNDGWS
301: TIGSSCRNLK ILHVDRCRNL CDQGLHALGG CVRLTVLYMH GCHRVSYTGL ETFKMLRQDV QIRREGCVSV GPPINKFFAY

Best Arabidopsis Sequence Match ( AT3G07550.2 )
(BLAST)

001: MEDVSESDNN VETSIIHLPD DCLSFIFQRL DSVADHDSFG LTCHRWLNIQ NISRRSLQFQ CSFSVLNPSS LSQTNPDVSS HHLHRLLTRF QWLEHLSLSG
101: CTVLNDSSLD SLRYPGARLH TLYLDCCFGI SDDGISTIAS FCPNLSVVSL YRCNISDIGL ETLARASLSL KCVNLSYCPL VSDFGIKALS QACLQLESVK
201: ISNCKSITGV GFSGCSPTLG YVDADSCQLE PKGITGIISG GGIEFLNISG VSCYIRKDGL VPIGSGIASK LRILNLRMCR TVGDESIEAI AKGCPLLQEW
301: NLALCHEVKI SGWEAVGKWC RNLKKLHVNR CRNLCDQGLL ALRCGCMNLQ ILYMNGNARL TPTAIEMFRL HRADITLRTE EMMVIGPDWR LYAQE

Arabidopsis Description

FBL12F-box/LRR-repeat protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.