Factsheet for Solyc06g007680.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053176	Potato	cytosol	94.0	96.41
KRH47976	Soybean	cytosol	54.5	56.19
AT3G07550.2	Thale cress	cytosol	54.5	55.19
Bra029656.1-P	Field mustard	cytosol	52.25	52.91
CDY28039	Canola	cytosol	50.75	52.05
CDY35942	Canola	cytosol	51.25	51.9
GSMUA_Achr8P28940_001	Banana	cytosol	47.25	49.74
Os11t0264200-01	Rice	cytosol	45.0	47.24
TraesCS4D01G083300.1	Wheat	cytosol	43.0	44.56
HORVU4Hr1G014630.1	Barley	cytosol	42.75	44.3
EES09509	Sorghum	cytosol	41.25	42.75
TraesCS4B01G085300.2	Wheat	plastid	39.5	39.01
TraesCS4A01G230600.2	Wheat	plastid	39.25	38.77
Zm00001d007294_P001	Maize	cytosol	38.25	37.68
Solyc04g008980.2.1	Tomato	cytosol	23.0	21.9
Solyc06g030620.1.1	Tomato	cytosol	9.25	18.41
Solyc04g063380.2.1	Tomato	cytosol	14.25	15.66
Solyc04g078490.1.1	Tomato	cytosol	19.25	14.42
Solyc02g092990.1.1	Tomato	plastid	19.75	14.36
Solyc01g099970.2.1	Tomato	extracellular	22.0	14.22
Solyc06g054440.2.1	Tomato	mitochondrion	18.75	14.02
Solyc12g009560.1.1	Tomato	cytosol	22.25	13.97
Solyc10g076290.1.1	Tomato	cytosol	23.0	13.63
Solyc03g044220.1.1	Tomato	cytosol	18.5	13.48
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	21.5	13.42
Solyc08g060810.2.1	Tomato	plastid	21.75	13.08
Solyc06g030610.1.1	Tomato	cytosol	8.75	12.77
Solyc06g049010.1.1	Tomato	plastid	19.75	12.74
Solyc06g005380.2.1	Tomato	cytosol	10.75	12.43

Protein Annotations

EnsemblPlants:Solyc06g007680.1.1	EnsemblPlantsGene:Solyc06g007680.1	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PFAM:PF13516	SMART:SM00367
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002766320	UniProt:K4C3E9	MapMan:35.1	:

Description

F-box/LRR-repeat protein 12 [Source:Projected from Arabidopsis thaliana (AT3G07550) UniProtKB/Swiss-Prot;Acc:Q9SRR1]

Coordinates

chr6:+:1681082..1682284

Molecular Weight (calculated)

44453.6 Da

IEP (calculated)

7.686

GRAVY (calculated)

0.029

Length

400 amino acids

Sequence
(BLAST)

001: MDNPSSNLVE MDNPSDDFSG YIMQLPDDCL LFIFQHLDCG SDRESFGLTC RRWLQIQNLN RRSLQFQCSF TVLNFSSLSQ TNTQISTLHL YRLLNRFQNL
101: ESLSLSGCTE LPDSGLSLLP HHGSKLRSLH LDCCFGITDS GLSCVASGCS LLVILSLYRC NVTDCGLEAL SNSCLALEDL NLSYCSRISD YGVKAISQNC
201: RHLRAIRISY CRNLTGAGFQ GCSQTLTHLE ADYCRLEPNG IRSILSGGGV EYLSVSNLTW CTRVNGLVAI SIGFAAKLRV LNFRSSRTIG NDCIMTIAKG
301: CPSLQEWNLA ICHEVKIAGW ESIASHCHNL KTLHVNRCRN LCDRGLQALR TGCKRLSILY ITRSSQISGV ALEIFKLARS NVEVKEEEVM CICPHGAFRF

Best Arabidopsis Sequence Match ( AT3G07550.2 )
(BLAST)

001: MEDVSESDNN VETSIIHLPD DCLSFIFQRL DSVADHDSFG LTCHRWLNIQ NISRRSLQFQ CSFSVLNPSS LSQTNPDVSS HHLHRLLTRF QWLEHLSLSG
101: CTVLNDSSLD SLRYPGARLH TLYLDCCFGI SDDGISTIAS FCPNLSVVSL YRCNISDIGL ETLARASLSL KCVNLSYCPL VSDFGIKALS QACLQLESVK
201: ISNCKSITGV GFSGCSPTLG YVDADSCQLE PKGITGIISG GGIEFLNISG VSCYIRKDGL VPIGSGIASK LRILNLRMCR TVGDESIEAI AKGCPLLQEW
301: NLALCHEVKI SGWEAVGKWC RNLKKLHVNR CRNLCDQGLL ALRCGCMNLQ ILYMNGNARL TPTAIEMFRL HRADITLRTE EMMVIGPDWR LYAQE

Arabidopsis Description

FBL12F-box/LRR-repeat protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.