Factsheet for Solyc07g008250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, peroxisome

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	94.54	94.39
Solyc12g009560.1.1	Tomato	cytosol	75.51	75.98
VIT_11s0016g05410.t01	Wine grape	cytosol	67.24	65.01
KRH03688	Soybean	cytosol	63.49	63.69
KRH20255	Soybean	cytosol	63.34	63.54
KRH62989	Soybean	cytosol	63.34	62.46
KRH04870	Soybean	cytosol	23.56	55.51
Solyc08g060810.2.1	Tomato	plastid	55.69	53.68
GSMUA_Achr6P05220_001	Banana	cytosol	53.04	51.99
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	51.95	50.92
GSMUA_Achr4P30680_001	Banana	cytosol	51.64	50.77
HORVU7Hr1G090240.1	Barley	cytosol	41.65	49.54
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	20.12	48.5
Zm00001d015778_P001	Maize	cytosol	48.52	48.37
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	50.39	48.35
Zm00001d053642_P001	Maize	cytosol	48.99	48.23
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	49.14	48.09
EER90022	Sorghum	cytosol, plastid	46.33	47.44
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	49.3	47.31
TraesCS6B01G210700.1	Wheat	cytosol	47.89	47.3
TraesCS6A01G181900.1	Wheat	cytosol	47.89	47.3
TraesCS6D01G169200.1	Wheat	cytosol	47.74	47.15
HORVU6Hr1G038430.3	Barley	plastid	47.89	47.01
TraesCS7B01G278800.1	Wheat	cytosol	47.43	46.99
Os02t0200900-01	Rice	cytosol	48.21	46.82
TraesCS7A01G377500.1	Wheat	cytosol	47.27	46.69
TraesCS7D01G373800.1	Wheat	cytosol	47.27	46.54
Solyc06g049010.1.1	Tomato	plastid	43.84	45.32
Os06t0605900-01	Rice	cytosol	43.84	44.82
Solyc06g030610.1.1	Tomato	cytosol	17.94	41.97
Solyc06g030620.1.1	Tomato	cytosol	12.95	41.29
HORVU5Hr1G029670.1	Barley	mitochondrion	32.29	40.35
Zm00001d036880_P003	Maize	cytosol	45.55	39.67
Zm00001d000408_P001	Maize	cytosol	45.87	39.57
HORVU5Hr1G000950.4	Barley	plastid	27.15	38.93
Solyc04g063380.2.1	Tomato	cytosol	13.73	24.18
Solyc06g005380.2.1	Tomato	cytosol	12.79	23.7
Solyc06g054440.2.1	Tomato	mitochondrion	19.19	22.99
Solyc04g078490.1.1	Tomato	cytosol	18.1	21.72
Solyc06g007680.1.1	Tomato	cytosol	13.42	21.5
Solyc10g076290.1.1	Tomato	cytosol	22.62	21.48
Solyc02g092990.1.1	Tomato	plastid	18.41	21.45
Solyc04g008980.2.1	Tomato	cytosol	13.73	20.95
Solyc01g099970.2.1	Tomato	extracellular	20.12	20.84
Solyc03g044220.1.1	Tomato	cytosol	17.32	20.22

Protein Annotations

MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	UniProt:K4CBU4
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44327
PANTHER:PTHR44327:SF1	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc07g008250.2
EnsemblPlants:Solyc07g008250.2.1	UniParc:UPI000276B206	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:-:2976382..2979543

Molecular Weight (calculated)

68271.7 Da

IEP (calculated)

6.681

GRAVY (calculated)

0.121

Length

641 amino acids

Sequence
(BLAST)

001: MSTLVNYSGD NEFYSGGSLC SADLGLILAL GHADIYCPVS KRARISGPFI VEERTKNPSI ELLPNECLFE IFRRLEGGRE RSAAACVSKR WLMLLSNMRS
101: SDIRHTNLSA ANGASDDTKM ASSDEDQVEC DGYLTRCLEG KKATDIRLSA MAVGTSSRGG LGKLSVRGSN PVRGITNVGL TAIAHGCPSL RVLSLWDVQD
201: VGDEGLMEIA RGCHSLEKLD LTKCPSVSNK GLVAIAENCP SLTSLTIESC KHIGNEGLQA IGRCCTKLES LTIKDCPLVG DQAVVSLLSS DNTRLRKVKL
301: HSLNITDFSL AIIGHYGKAI TDLNLCKLEH VSPRGFWVMG AAHGLQSLAS LTVTSCIGLA DESLEEVGKG CTNMKSMCFR ECKHVTDSGL VAFAQAAGSL
401: EHLLLEQCDK ITQTGILNAV SICSKLKSLS LVKCLGVRDL PPQASSLSPC DSLRSLSIRS CPGFGSTSLA MVGKLCPQLH HLDLSGLTRI TDAGLLPLLE
501: SSKAGLVKVN LTHCMNVTDE VVLSLARLHG ETLELLNLDG CRKVTDASLV AIADNCLLLN DLDVSKCSIT DSGVAALSQG VQMNLQVLSL SGCSMVTNKS
601: FSSLRTLGES LIGLNLQHCS SIGSSRVEAL VEDLWRCDIL S

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.