Factsheet for Zm00001d053642_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007188_P001
Zm00001d011238_P001
Zm00001d022530_P001
Zm00001d028974_P001
Zm00001d042193_P001
Zm00001d047563_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25490.1	Zm00001d007188_P001	AT2G27050.1	14675533
AT2G25490.1	Zm00001d022530_P001	AT2G27050.1	14675533
AT2G25490.1	Zm00001d028974_P001	AT2G27050.1	14675533
AT2G25490.1	Zm00001d047563_P001	AT2G27050.1	14675533
AT2G25490.1	Zm00001d007188_P001	AT3G20770.1	14675532
AT2G25490.1	Zm00001d022530_P001	AT3G20770.1	14675532
AT2G25490.1	Zm00001d028974_P001	AT3G20770.1	14675532
AT2G25490.1	Zm00001d047563_P001	AT3G20770.1	14675532
AT2G25490.1	Zm00001d007188_P001	AT3G20770.1	14675533
AT2G25490.1	Zm00001d022530_P001	AT3G20770.1	14675533
AT2G25490.1	Zm00001d028974_P001	AT3G20770.1	14675533
AT2G25490.1	Zm00001d047563_P001	AT3G20770.1	14675533
AT2G25490.1	Zm00001d011238_P001	AT3G28715.1	21798944
AT2G25490.1	Zm00001d042193_P001	AT4G02570.1	14675533
AT5G25350.1	Zm00001d007188_P001	AT3G20770.1	14675532
AT5G25350.1	Zm00001d022530_P001	AT3G20770.1	14675532
AT5G25350.1	Zm00001d028974_P001	AT3G20770.1	14675532
AT5G25350.1	Zm00001d047563_P001	AT3G20770.1	14675532
AT5G25350.1	Zm00001d007188_P001	AT3G20770.1	14675533
AT5G25350.1	Zm00001d022530_P001	AT3G20770.1	14675533
AT5G25350.1	Zm00001d028974_P001	AT3G20770.1	14675533
AT5G25350.1	Zm00001d047563_P001	AT3G20770.1	14675533
AT5G25350.1	Zm00001d042193_P001	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	94.93	94.35
Zm00001d015778_P001	Maize	cytosol	91.24	92.38
TraesCS6B01G210700.1	Wheat	cytosol	83.87	84.13
TraesCS6D01G169200.1	Wheat	cytosol	83.41	83.67
TraesCS6A01G181900.1	Wheat	cytosol	83.41	83.67
HORVU6Hr1G038430.3	Barley	plastid	82.18	81.93
Os02t0200900-01	Rice	cytosol	82.95	81.82
Zm00001d036880_P003	Maize	cytosol	66.21	58.56
Zm00001d000408_P001	Maize	cytosol	66.67	58.41
GSMUA_Achr6P05220_001	Banana	cytosol	54.53	54.28
GSMUA_Achr4P30680_001	Banana	cytosol	54.07	53.99
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	53.46	53.21
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	18.13	53.15
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	53.92	52.54
PGSC0003DMT400007545	Potato	cytosol	50.23	51.33
Solyc12g009560.1.1	Tomato	cytosol	49.92	51.02
KRH03688	Soybean	cytosol	49.92	50.86
Zm00001d037295_P001	Maize	mitochondrion	18.89	50.41
KRH20255	Soybean	cytosol	49.46	50.39
VIT_11s0016g05410.t01	Wine grape	cytosol	50.38	49.47
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	48.69	49.38
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	50.54	49.25
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	48.23	48.99
KRH62989	Soybean	cytosol	48.54	48.62
VIT_04s0008g05470.t01	Wine grape	cytosol	49.62	48.43
KRH15886	Soybean	cytosol	47.62	48.14
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	17.2	48.07
PGSC0003DMT400040977	Potato	nucleus	49.0	47.68
AT5G25350.1	Thale cress	cytosol	45.62	47.67
Solyc08g060810.2.1	Tomato	plastid	48.69	47.67
Bra036542.1-P	Field mustard	cytosol	45.01	47.56
KRH05167	Soybean	cytosol	44.39	47.38
CDY19807	Canola	cytosol	44.55	47.08
CDX88173	Canola	cytosol	44.7	46.78
CDX87090	Canola	cytosol	44.24	46.75
CDX80503	Canola	cytosol	44.55	46.7
AT2G25490.1	Thale cress	plastid	45.01	46.66
Bra009835.1-P	Field mustard	cytosol	44.39	46.46
CDX76980	Canola	cytosol	42.55	46.24
KRH61771	Soybean	cytosol	45.16	46.23
Bra034254.1-P	Field mustard	cytosol	44.09	46.14
KRH52439	Soybean	cytosol, nucleus, peroxisome	45.16	46.08
CDY35358	Canola	cytosol	44.09	46.07
KRH04870	Soybean	cytosol	18.43	44.12
PGSC0003DMT400094835	Potato	cytosol	15.82	42.04
PGSC0003DMT400042949	Potato	cytosol	35.18	41.49
PGSC0003DMT400089433	Potato	mitochondrion	29.19	41.39
Solyc06g049010.1.1	Tomato	plastid	38.86	40.81
Solyc06g030610.1.1	Tomato	cytosol	16.28	38.69
Solyc06g030620.1.1	Tomato	cytosol	11.83	38.31
Zm00001d051219_P001	Maize	cytosol	16.74	26.14
Zm00001d007640_P001	Maize	cytosol	22.73	23.57
Zm00001d015974_P002	Maize	cytosol	12.9	23.46
Zm00001d048695_P001	Maize	cytosol	21.81	21.91
Zm00001d041635_P002	Maize	cytosol	22.12	21.72
Zm00001d023825_P001	Maize	cytosol	21.81	21.52
Zm00001d038224_P004	Maize	cytosol	12.14	21.47
Zm00001d007294_P001	Maize	cytosol	12.9	20.69
Zm00001d044622_P002	Maize	mitochondrion	22.12	20.45
Zm00001d003103_P001	Maize	plastid	16.13	20.19
Zm00001d005072_P003	Maize	mitochondrion	22.27	20.0
Zm00001d025812_P001	Maize	plastid	16.74	19.96
Zm00001d025808_P001	Maize	plastid	16.74	19.96
Zm00001d019677_P001	Maize	cytosol	15.98	19.81
Zm00001d000224_P001	Maize	cytosol	12.29	18.48

Protein Annotations

EntrezGene:100279520	MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	UniProt:A0A1D6QR61	ProteinID:AQK59995.1
ncoils:Coil	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44327	PANTHER:PTHR44327:SF3	SMART:SM00367	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0004DE85A0	EnsemblPlantsGene:Zm00001d053642	EnsemblPlants:Zm00001d053642_P001	EnsemblPlants:Zm00001d053642_T001	SEG:seg

Description

EIN3-binding F-box protein 1

Coordinates

chr4:+:238091051..238094140

Molecular Weight (calculated)

68703.9 Da

IEP (calculated)

7.573

GRAVY (calculated)

0.268

Length

651 amino acids

Sequence
(BLAST)

001: MPALYAYYGD GGCLVSAPAE LAGLFCRGAV QQRKRTLVTA SAVAAAAAEF VRAAKKQRQL PLPSLDALPD ECLFEILRRV PGGRGRGASA CVSRRWLALL
101: GSIRASELGQ AAAAAADTPS LPDLNEEFVM EEDNEESPAD RCVDRVLEGK EATDVRLAAM AVVAGSRGGL EKLAVRGSHP TRGVTDQGLS AVARGSPNLS
201: SLALWDVPLI TDAGLAEIAA GCPSLERLDI CRCPLITDKG LVAVAQGCPN LVSLTIEACP GVANEGLRAI GRSCVKLQAV NIKNCPLVGD QGISSLVCSA
301: TAALTKIRLQ GLNITDASLA VIGYYGKAIT DLTLTRLAAV GERGFWVMAN AAGLQNLRCM SVTSCPGVTD LALASIAKFC PNLKQLYLRK CGYVSDAGLK
401: AFTESAKVFE NLHLEECNRV SLVGILAFLL NCREKFRALS LVKCMGIKDI CSAPAQLPLC RSLRFLTIKD CPGFTDASLA AVGMICPQLE QVDLSGLGEV
501: TDNGLLPLIQ SSEAGLVKVD LSGCKNITDV AVSSLVKGHG KSLKKINLEG CSKITDAILF TMSESCTELA ELNLSNCMVS DYGVAILASA RHLKLRVLSL
601: SGCSKVTQKS VLFLGNLGQS IEGLNLQFCD MIGNHNIASL EKKLWWCDIL A

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.