Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX88173 | Canola | cytosol | 86.84 | 86.98 |
Bra009835.1-P | Field mustard | cytosol | 86.52 | 86.66 |
CDX80503 | Canola | cytosol | 86.36 | 86.63 |
CDX87090 | Canola | cytosol | 84.27 | 85.23 |
Bra036542.1-P | Field mustard | cytosol | 83.31 | 84.25 |
CDY19807 | Canola | cytosol | 82.83 | 83.77 |
KRH15886 | Soybean | cytosol | 60.03 | 58.07 |
AT2G25490.1 | Thale cress | plastid | 57.62 | 57.17 |
KRH05167 | Soybean | cytosol | 54.41 | 55.57 |
KRH61771 | Soybean | cytosol | 56.34 | 55.19 |
VIT_04s0008g05470.t01 | Wine grape | cytosol | 58.27 | 54.42 |
KRH52439 | Soybean | cytosol, nucleus, peroxisome | 55.7 | 54.39 |
PGSC0003DMT400040977 | Potato | nucleus | 57.46 | 53.51 |
Solyc08g060810.2.1 | Tomato | plastid | 56.02 | 52.48 |
GSMUA_Achr4P30680_001 | Banana | cytosol | 50.4 | 48.16 |
PGSC0003DMT400094835 | Potato | cytosol | 18.78 | 47.76 |
GSMUA_Achr6P05220_001 | Banana | cytosol | 49.92 | 47.55 |
GSMUA_Achr9P28510_001 | Banana | cytosol, nucleus, peroxisome | 49.28 | 46.94 |
GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 50.24 | 46.86 |
EES06473 | Sorghum | cytosol, peroxisome, plasma membrane | 48.15 | 45.8 |
PGSC0003DMT400089433 | Potato | mitochondrion | 33.71 | 45.75 |
Zm00001d053642_P001 | Maize | cytosol | 47.67 | 45.62 |
Zm00001d015778_P001 | Maize | cytosol | 46.71 | 45.26 |
TraesCS6D01G169200.1 | Wheat | cytosol | 47.03 | 45.15 |
HORVU7Hr1G090240.1 | Barley | cytosol | 39.0 | 45.08 |
Solyc06g049010.1.1 | Tomato | plastid | 44.78 | 45.0 |
PGSC0003DMT400042949 | Potato | cytosol | 39.81 | 44.93 |
TraesCS6A01G181900.1 | Wheat | cytosol | 46.71 | 44.84 |
HORVU1Hr1G089690.1 | Barley | cytosol, extracellular, mitochondrion | 19.1 | 44.74 |
EER90022 | Sorghum | cytosol, plastid | 44.94 | 44.73 |
TraesCS6B01G210700.1 | Wheat | cytosol | 46.55 | 44.68 |
Os02t0200900-01 | Rice | cytosol | 47.19 | 44.55 |
HORVU6Hr1G038430.3 | Barley | plastid | 46.55 | 44.41 |
GSMUA_Achr2P15920_001 | Banana | cytosol, peroxisome, plastid | 47.03 | 43.86 |
TraesCS7B01G278800.1 | Wheat | cytosol | 44.62 | 42.97 |
TraesCS7D01G373800.1 | Wheat | cytosol | 44.62 | 42.7 |
TraesCS7A01G377500.1 | Wheat | cytosol | 44.3 | 42.53 |
Os06t0605900-01 | Rice | cytosol | 41.89 | 41.63 |
Solyc06g030610.1.1 | Tomato | cytosol | 17.82 | 40.51 |
Solyc06g030620.1.1 | Tomato | cytosol | 12.52 | 38.81 |
Zm00001d036880_P003 | Maize | cytosol | 44.46 | 37.64 |
HORVU5Hr1G029670.1 | Barley | mitochondrion | 30.5 | 37.04 |
Zm00001d000408_P001 | Maize | cytosol | 44.14 | 37.01 |
HORVU5Hr1G000950.4 | Barley | plastid | 25.52 | 35.57 |
AT4G15475.1 | Thale cress | cytosol | 23.76 | 24.26 |
AT5G23340.1 | Thale cress | cytosol | 15.73 | 24.2 |
AT1G77000.1 | Thale cress | cytosol | 13.64 | 23.61 |
AT1G21410.1 | Thale cress | cytosol | 12.84 | 22.22 |
AT1G47056.1 | Thale cress | cytosol, plastid | 18.14 | 21.81 |
AT3G58530.1 | Thale cress | cytosol | 12.36 | 21.81 |
AT3G07550.2 | Thale cress | cytosol | 13.64 | 21.52 |
AT5G01720.1 | Thale cress | vacuole | 22.95 | 21.5 |
AT3G50080.1 | Thale cress | cytosol | 17.34 | 20.69 |
AT5G67250.1 | Thale cress | cytosol | 17.34 | 20.49 |
AT5G27920.1 | Thale cress | cytosol, extracellular, peroxisome | 21.03 | 20.41 |
AT4G07400.1 | Thale cress | nucleus | 17.82 | 20.04 |
Protein Annotations
MapMan:11.5.2.6 | MapMan:19.2.2.8.1.4.2 | Gene3D:3.80.10.10 | EntrezGene:832607 | EMBL:AC006258 | ProteinID:AED93429.1 |
EMBL:AJ609239 | EMBL:AK227858 | ArrayExpress:AT5G25350 | EnsemblPlantsGene:AT5G25350 | RefSeq:AT5G25350 | TAIR:AT5G25350 |
RefSeq:AT5G25350-TAIR-G | EnsemblPlants:AT5G25350.1 | TAIR:AT5G25350.1 | EMBL:AY485830 | Symbol:EBF2 | InterPro:F-box-like_dom_sf |
InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007154 | GO:GO:0007165 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009873 |
GO:GO:0009987 | GO:GO:0010105 | GO:GO:0016567 | GO:GO:0019005 | GO:GO:0019538 | InterPro:IPR001611 |
InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp | RefSeq:NP_197917.1 |
PFAM:PF00646 | PFAM:PF13516 | PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000084 |
PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 |
PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR44327 |
PANTHER:PTHR44327:SF1 | UniProt:Q708Y0 | SMART:SM00256 | SMART:SM00367 | SUPFAM:SSF52047 | SUPFAM:SSF81383 |
UniParc:UPI0000162590 | SEG:seg | : | : | : | : |
Description
EBF2EIN3-binding F-box protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q708Y0]
Coordinates
chr5:-:8794252..8797349
Molecular Weight (calculated)
66065.0 Da
IEP (calculated)
7.811
GRAVY (calculated)
0.151
Length
623 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGIFRFSGD EDCLLGGSMY LSPGSCPGVY YPARKRLRVA ATSFYSGFEE KQTSIDVLPE ECLFEILRRL PSGQERSACA CVSKHWLNLL SSISRSEVNE
101: SSVQDVEEGE GFLSRSLEGK KATDLRLAAI AVGTSSRGGL GKLQIRGSGF ESKVTDVGLG AVAHGCPSLR IVSLWNLPAV SDLGLSEIAR SCPMIEKLDL
201: SRCPGITDSG LVAIAENCVN LSDLTIDSCS GVGNEGLRAI ARRCVNLRSI SIRSCPRIGD QGVAFLLAQA GSYLTKVKLQ MLNVSGLSLA VIGHYGAAVT
301: DLVLHGLQGV NEKGFWVMGN AKGLKKLKSL SVMSCRGMTD VGLEAVGNGC PDLKHVSLNK CLLVSGKGLV ALAKSALSLE SLKLEECHRI NQFGLMGFLM
401: NCGSKLKAFS LANCLGISDF NSESSLPSPS CSSLRSLSIR CCPGFGDASL AFLGKFCHQL QDVELCGLNG VTDAGVRELL QSNNVGLVKV NLSECINVSD
501: NTVSAISVCH GRTLESLNLD GCKNITNASL VAVAKNCYSV NDLDISNTLV SDHGIKALAS SPNHLNLQVL SIGGCSSITD KSKACIQKLG RTLLGLNIQR
601: CGRISSSTVD TLLENLWRCD ILY
101: SSVQDVEEGE GFLSRSLEGK KATDLRLAAI AVGTSSRGGL GKLQIRGSGF ESKVTDVGLG AVAHGCPSLR IVSLWNLPAV SDLGLSEIAR SCPMIEKLDL
201: SRCPGITDSG LVAIAENCVN LSDLTIDSCS GVGNEGLRAI ARRCVNLRSI SIRSCPRIGD QGVAFLLAQA GSYLTKVKLQ MLNVSGLSLA VIGHYGAAVT
301: DLVLHGLQGV NEKGFWVMGN AKGLKKLKSL SVMSCRGMTD VGLEAVGNGC PDLKHVSLNK CLLVSGKGLV ALAKSALSLE SLKLEECHRI NQFGLMGFLM
401: NCGSKLKAFS LANCLGISDF NSESSLPSPS CSSLRSLSIR CCPGFGDASL AFLGKFCHQL QDVELCGLNG VTDAGVRELL QSNNVGLVKV NLSECINVSD
501: NTVSAISVCH GRTLESLNLD GCKNITNASL VAVAKNCYSV NDLDISNTLV SDHGIKALAS SPNHLNLQVL SIGGCSSITD KSKACIQKLG RTLLGLNIQR
601: CGRISSSTVD TLLENLWRCD ILY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.