Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88173 | Canola | cytosol | 96.3 | 96.14 |
| AT5G25350.1 | Thale cress | cytosol | 86.63 | 86.36 |
| CDX87090 | Canola | cytosol | 83.09 | 83.77 |
| CDY19807 | Canola | cytosol | 81.8 | 82.47 |
| CDX76980 | Canola | cytosol | 56.2 | 58.26 |
| CDY35358 | Canola | cytosol | 57.65 | 57.46 |
| KRH15886 | Soybean | cytosol | 58.78 | 56.68 |
| VIT_04s0008g05470.t01 | Wine grape | cytosol | 58.94 | 54.87 |
| KRH05167 | Soybean | cytosol | 53.62 | 54.59 |
| KRH61771 | Soybean | cytosol | 54.27 | 52.99 |
| PGSC0003DMT400040977 | Potato | nucleus | 56.84 | 52.77 |
| KRH52439 | Soybean | cytosol, nucleus, peroxisome | 53.62 | 52.19 |
| Solyc08g060810.2.1 | Tomato | plastid | 55.88 | 52.18 |
| PGSC0003DMT400089433 | Potato | mitochondrion | 34.62 | 46.84 |
| GSMUA_Achr4P30680_001 | Banana | cytosol | 48.79 | 46.47 |
| GSMUA_Achr6P05220_001 | Banana | cytosol | 48.47 | 46.02 |
| GSMUA_Achr9P28510_001 | Banana | cytosol, nucleus, peroxisome | 47.99 | 45.57 |
| PGSC0003DMT400042949 | Potato | cytosol | 40.26 | 45.29 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 48.63 | 45.21 |
| EES06473 | Sorghum | cytosol, peroxisome, plasma membrane | 47.18 | 44.73 |
| TraesCS6D01G169200.1 | Wheat | cytosol | 46.7 | 44.68 |
| Zm00001d053642_P001 | Maize | cytosol | 46.7 | 44.55 |
| TraesCS6A01G181900.1 | Wheat | cytosol | 46.54 | 44.53 |
| TraesCS6B01G210700.1 | Wheat | cytosol | 46.38 | 44.38 |
| HORVU7Hr1G090240.1 | Barley | cytosol | 38.49 | 44.34 |
| Solyc06g049010.1.1 | Tomato | plastid | 44.12 | 44.19 |
| Zm00001d015778_P001 | Maize | cytosol | 45.73 | 44.17 |
| PGSC0003DMT400094835 | Potato | cytosol | 17.39 | 44.08 |
| HORVU1Hr1G089690.1 | Barley | cytosol, extracellular, mitochondrion | 18.84 | 43.98 |
| HORVU6Hr1G038430.3 | Barley | plastid | 46.22 | 43.95 |
| Os02t0200900-01 | Rice | cytosol | 46.7 | 43.94 |
| EER90022 | Sorghum | cytosol, plastid | 44.12 | 43.77 |
| TraesCS7B01G278800.1 | Wheat | cytosol | 44.12 | 42.35 |
| GSMUA_Achr2P15920_001 | Banana | cytosol, peroxisome, plastid | 45.41 | 42.22 |
| TraesCS7D01G373800.1 | Wheat | cytosol | 43.96 | 41.94 |
| TraesCS7A01G377500.1 | Wheat | cytosol | 43.8 | 41.91 |
| Os06t0605900-01 | Rice | cytosol | 41.55 | 41.15 |
| Solyc06g030610.1.1 | Tomato | cytosol | 17.71 | 40.15 |
| Zm00001d036880_P003 | Maize | cytosol | 44.61 | 37.64 |
| Zm00001d000408_P001 | Maize | cytosol | 44.12 | 36.88 |
| Solyc06g030620.1.1 | Tomato | cytosol | 11.76 | 36.32 |
| HORVU5Hr1G029670.1 | Barley | mitochondrion | 29.95 | 36.26 |
| HORVU5Hr1G000950.4 | Barley | plastid | 25.76 | 35.79 |
| CDX88014 | Canola | cytosol | 16.59 | 25.43 |
| CDY46953 | Canola | cytosol | 15.94 | 24.09 |
| CDX88336 | Canola | cytosol | 12.56 | 24.07 |
| CDY40798 | Canola | cytosol | 15.78 | 23.84 |
| CDY09760 | Canola | cytosol | 23.99 | 23.76 |
| CDY58589 | Canola | extracellular | 4.99 | 23.66 |
| CDX90588 | Canola | cytosol | 23.83 | 23.53 |
| CDX68067 | Canola | cytosol | 13.53 | 23.4 |
| CDX87549 | Canola | cytosol | 13.37 | 23.38 |
| CDX83114 | Canola | cytosol | 18.52 | 23.14 |
| CDX71945 | Canola | cytosol | 13.04 | 22.95 |
| CDX79184 | Canola | cytosol | 13.2 | 22.84 |
| CDY58588 | Canola | extracellular | 4.83 | 22.73 |
| CDY06032 | Canola | cytosol | 12.88 | 22.66 |
| CDX96592 | Canola | cytosol | 13.2 | 22.65 |
| CDY67973 | Canola | plasma membrane | 13.04 | 22.38 |
| CDX68575 | Canola | cytosol | 18.2 | 22.11 |
| CDY25663 | Canola | plastid | 17.87 | 21.6 |
| CDY43846 | Canola | plastid | 17.71 | 21.4 |
| CDY18646 | Canola | cytosol | 18.04 | 21.37 |
| CDX81326 | Canola | cytosol | 18.04 | 21.37 |
| CDY11182 | Canola | cytosol, endoplasmic reticulum, nucleus | 23.19 | 21.3 |
| CDY19741 | Canola | cytosol | 20.61 | 20.75 |
| CDX80753 | Canola | endoplasmic reticulum | 22.54 | 20.71 |
| CDY28039 | Canola | cytosol | 12.72 | 20.26 |
| CDY53337 | Canola | cytosol | 20.77 | 20.19 |
| CDY35942 | Canola | cytosol | 12.72 | 20.0 |
| CDX88253 | Canola | cytosol | 20.13 | 19.53 |
| CDX80608 | Canola | cytosol | 19.97 | 19.38 |
| CDY45764 | Canola | cytosol, peroxisome, plastid | 16.59 | 17.67 |
| CDY29091 | Canola | plastid | 3.7 | 13.29 |
| CDY01426 | Canola | cytosol | 18.2 | 10.43 |
| CDY12824 | Canola | nucleus | 18.2 | 10.37 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:11.5.2.6 | MapMan:19.2.2.8.1.4.2 | Gene3D:3.80.10.10 | EnsemblPlants:CDX80503 | ProteinID:CDX80503 |
| ProteinID:CDX80503.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSBRNA2T00133604001 | InterPro:IPR001611 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt |
| InterPro:Leu-rich_rpt_Cys-con_subtyp | PFAM:PF00646 | PFAM:PF13516 | PANTHER:PTHR44327 | PANTHER:PTHR44327:SF1 | SMART:SM00367 |
| SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0004EAF650 | SEG:seg | : | : |
Description
BnaC07g29410D
Coordinates
chrLK031821:-:976827..979576
Molecular Weight (calculated)
65250.8 Da
IEP (calculated)
8.058
GRAVY (calculated)
0.150
Length
621 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGIFRISGD DEFFTGGGSS MHLSPGSCPG VYLPARKRLR VASAAATSFY SSFEEKQTSI QVLPDECLFE ILRRLPSSGR ERSACACVSK HWLSVLSSIA
101: RNESVEEVES EGFLSRSLEG NKATDLRLAA ISVGTSARGG LGKLQIRGSG FESKVTDAGL GAVARGCASL KVLSLWNLPA VSDVGVSEIA RSCPLIEKLD
201: LSRCPGITDK GLVAIAENCK NLSELTIDSC SGVGNEGLRA VARGCGNLRS ISIKSCPRIG DQGVSFLLAQ AGSYLTKVKL QMVNVTGLSL AVLGHYGSGV
301: TDLVLHGLQG VNEKGFWVMG NAKGMKKLKS LSVTSCRGMT DVGLEAVGNG CPDLKHVCLN KCLLVSGKGL VALAKSASSL ESLKLEECHR VNQFGFLGFL
401: MNCGSTMKSF SMANCLGISE APLPSSTSCS SLRSLSIRHC PGFGDASLSF LGKLCHQLQD IELCGLNGVT DAGVFELVQS NSVGLVKVNL SGCINVSDNA
501: VSAISVCHGR TLESLNVDGC KNITDASLVA VAKNCYSVND LDVSNTLVSD QGVKALASSP NHLNLQVLSV GGCSAITDKS KACIQKLGRT LLGLNIQRCG
601: RISSSTVDNL LEHLWRCDIL Y
101: RNESVEEVES EGFLSRSLEG NKATDLRLAA ISVGTSARGG LGKLQIRGSG FESKVTDAGL GAVARGCASL KVLSLWNLPA VSDVGVSEIA RSCPLIEKLD
201: LSRCPGITDK GLVAIAENCK NLSELTIDSC SGVGNEGLRA VARGCGNLRS ISIKSCPRIG DQGVSFLLAQ AGSYLTKVKL QMVNVTGLSL AVLGHYGSGV
301: TDLVLHGLQG VNEKGFWVMG NAKGMKKLKS LSVTSCRGMT DVGLEAVGNG CPDLKHVCLN KCLLVSGKGL VALAKSASSL ESLKLEECHR VNQFGFLGFL
401: MNCGSTMKSF SMANCLGISE APLPSSTSCS SLRSLSIRHC PGFGDASLSF LGKLCHQLQD IELCGLNGVT DAGVFELVQS NSVGLVKVNL SGCINVSDNA
501: VSAISVCHGR TLESLNVDGC KNITDASLVA VAKNCYSVND LDVSNTLVSD QGVKALASSP NHLNLQVLSV GGCSAITDKS KACIQKLGRT LLGLNIQRCG
601: RISSSTVDNL LEHLWRCDIL Y
001: MSGIFRFSGD EDCLLGGSMY LSPGSCPGVY YPARKRLRVA ATSFYSGFEE KQTSIDVLPE ECLFEILRRL PSGQERSACA CVSKHWLNLL SSISRSEVNE
101: SSVQDVEEGE GFLSRSLEGK KATDLRLAAI AVGTSSRGGL GKLQIRGSGF ESKVTDVGLG AVAHGCPSLR IVSLWNLPAV SDLGLSEIAR SCPMIEKLDL
201: SRCPGITDSG LVAIAENCVN LSDLTIDSCS GVGNEGLRAI ARRCVNLRSI SIRSCPRIGD QGVAFLLAQA GSYLTKVKLQ MLNVSGLSLA VIGHYGAAVT
301: DLVLHGLQGV NEKGFWVMGN AKGLKKLKSL SVMSCRGMTD VGLEAVGNGC PDLKHVSLNK CLLVSGKGLV ALAKSALSLE SLKLEECHRI NQFGLMGFLM
401: NCGSKLKAFS LANCLGISDF NSESSLPSPS CSSLRSLSIR CCPGFGDASL AFLGKFCHQL QDVELCGLNG VTDAGVRELL QSNNVGLVKV NLSECINVSD
501: NTVSAISVCH GRTLESLNLD GCKNITNASL VAVAKNCYSV NDLDISNTLV SDHGIKALAS SPNHLNLQVL SIGGCSSITD KSKACIQKLG RTLLGLNIQR
601: CGRISSSTVD TLLENLWRCD ILY
101: SSVQDVEEGE GFLSRSLEGK KATDLRLAAI AVGTSSRGGL GKLQIRGSGF ESKVTDVGLG AVAHGCPSLR IVSLWNLPAV SDLGLSEIAR SCPMIEKLDL
201: SRCPGITDSG LVAIAENCVN LSDLTIDSCS GVGNEGLRAI ARRCVNLRSI SIRSCPRIGD QGVAFLLAQA GSYLTKVKLQ MLNVSGLSLA VIGHYGAAVT
301: DLVLHGLQGV NEKGFWVMGN AKGLKKLKSL SVMSCRGMTD VGLEAVGNGC PDLKHVSLNK CLLVSGKGLV ALAKSALSLE SLKLEECHRI NQFGLMGFLM
401: NCGSKLKAFS LANCLGISDF NSESSLPSPS CSSLRSLSIR CCPGFGDASL AFLGKFCHQL QDVELCGLNG VTDAGVRELL QSNNVGLVKV NLSECINVSD
501: NTVSAISVCH GRTLESLNLD GCKNITNASL VAVAKNCYSV NDLDISNTLV SDHGIKALAS SPNHLNLQVL SIGGCSSITD KSKACIQKLG RTLLGLNIQR
601: CGRISSSTVD TLLENLWRCD ILY
Arabidopsis Description
EBF2EIN3-binding F-box protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q708Y0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.