CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96592	Canola	cytosol	98.34	98.34
AT1G21410.1	Thale cress	cytosol	90.06	90.56
CDX88336	Canola	cytosol	76.52	85.49
CDX87549	Canola	cytosol	82.04	83.66
CDX79184	Canola	cytosol	82.04	82.73
CDX68067	Canola	cytosol	81.49	82.17
CDY58589	Canola	extracellular	27.35	75.57
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	69.61	73.9
KRH64574	Soybean	cytosol	65.19	73.52
CDY58588	Canola	extracellular	26.8	73.48
Solyc04g063380.2.1	Tomato	cytosol	70.17	69.78
KRH15905	Soybean	cytosol	69.89	68.19
KRH53355	Soybean	cytosol	69.89	68.01
KRH18090	Soybean	cytosol	69.89	67.47
GSMUA_Achr10P...	Banana	cytosol	63.26	64.51
Zm00001d038224_P004	Maize	cytosol	65.19	64.13
EES18256	Sorghum	cytosol, nucleus, plastid	63.81	62.6
Os01t0881900-01	Rice	cytosol	65.47	62.53
GSMUA_Achr6P18620_001	Banana	cytosol	63.26	62.4
Os05t0425700-01	Rice	cytosol	64.36	61.97
TraesCS3D01G402900.2	Wheat	cytosol	64.64	61.58
TraesCS3A01G407700.1	Wheat	cytosol	64.36	61.32
VIT_18s0001g15010.t01	Wine grape	mitochondrion	72.38	61.22
TraesCS1D01G265100.1	Wheat	cytosol	62.43	61.08
TraesCS1A01G264900.1	Wheat	cytosol	62.43	61.08
HORVU1Hr1G065030.2	Barley	cytosol	63.81	60.95
TraesCS3B01G440600.2	Wheat	cytosol	64.09	60.89
GSMUA_AchrUn_...	Banana	cytosol	61.88	60.87
EES03986	Sorghum	cytosol	63.54	60.37
TraesCS1B01G275600.1	Wheat	cytosol	62.98	60.16
HORVU3Hr1G091200.4	Barley	cytosol	64.09	55.24
Zm00001d000224_P001	Maize	cytosol	63.81	53.35
CDX88014	Canola	cytosol	21.27	19.01
CDY40798	Canola	cytosol	20.17	17.76
CDX71945	Canola	cytosol	17.13	17.56
CDY06032	Canola	cytosol	17.13	17.56
CDY46953	Canola	cytosol	19.89	17.52
CDY28039	Canola	cytosol	14.92	13.85
CDX87090	Canola	cytosol	23.48	13.8
CDY19807	Canola	cytosol	23.48	13.8
CDY35942	Canola	cytosol	14.92	13.67
CDX88173	Canola	cytosol	22.93	13.34
CDY45764	Canola	cytosol, peroxisome, plastid	21.27	13.21
CDY09760	Canola	cytosol	22.65	13.08
CDX80503	Canola	cytosol	22.38	13.04
CDX90588	Canola	cytosol	22.65	13.04
CDX76980	Canola	cytosol	21.55	13.02
CDY35358	Canola	cytosol	22.1	12.84
CDX80753	Canola	endoplasmic reticulum	23.76	12.72
CDY11182	Canola	cytosol, endoplasmic reticulum, nucleus	23.48	12.57
CDY19741	Canola	cytosol	20.44	11.99
CDY53337	Canola	cytosol	20.44	11.58
CDY43846	Canola	plastid	16.3	11.48
CDX81326	Canola	cytosol	16.57	11.45
CDX80608	Canola	cytosol	20.17	11.41
CDX88253	Canola	cytosol	20.17	11.41
CDY25663	Canola	plastid	16.02	11.28
CDY18646	Canola	cytosol	16.3	11.26
CDX68575	Canola	cytosol	15.19	10.76
CDX83114	Canola	cytosol	14.64	10.66
CDY29091	Canola	plastid	3.87	8.09
CDY12824	Canola	nucleus	16.57	5.5
CDY01426	Canola	cytosol	16.3	5.45

Protein Annotations

MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	UniProt:A0A078JKC8	EnsemblPlants:CDY67973	ProteinID:CDY67973	ProteinID:CDY67973.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00068359001
InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44673	PANTHER:PTHR44673:SF1	SMART:SM00367	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0004EED888	:	:	:	:

Description

BnaCnng57130DBnaCnng57130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JKC8]

Coordinates

chrLK036712:-:4607..6941

Molecular Weight (calculated)

39864.5 Da

IEP (calculated)

7.119

GRAVY (calculated)

0.091

Length

362 amino acids

Sequence
(BLAST)

001: MVMVVGETSM ELDQCFQMMM MKMEGVSIKE WKDIPVELLL RILSLVDDRN VIAASGVCCG WRDAISLGLT RLRLSWCNNN MNSLVLSLAP KFIKLQTLIL
101: RQDKPQLEDN AVEAIANHCH ELQELDLSKS LRLTDRSLYA LAHGCPNLTK LNLSACTSFS DKAIAYLTTF CRNLKVLNLC GCVNAVSDYT LEAIGNNCNQ
201: MQSLNLGWCE KISDDGVMSL AYGCPDLRTL DLCGCVLITD ESVVALADWC VHLRSLGLYY CRNITDRAMY SLAQSGVKNK PGGQWKSSAK KSKFDEEGLR
301: SLNISQCTAL TPSAVQAVCD TFPALHTCSG RHSLVMSGCL NLTSVHCACI LQAHRSVPHS AH

Best Arabidopsis Sequence Match ( AT1G21410.1 )
(BLAST)

001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH

Arabidopsis Description

SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.