CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038224_P004	Maize	cytosol	96.21	96.47
Os05t0425700-01	Rice	cytosol	85.91	84.31
TraesCS1D01G265100.1	Wheat	cytosol	82.38	82.16
TraesCS1A01G264900.1	Wheat	cytosol	82.38	82.16
TraesCS1B01G275600.1	Wheat	cytosol	82.38	80.21
HORVU1Hr1G065030.2	Barley	cytosol	82.11	79.95
EES03986	Sorghum	cytosol	78.86	76.38
GSMUA_Achr10P...	Banana	cytosol	69.65	72.39
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	65.31	70.67
KRH64574	Soybean	cytosol	59.35	68.22
Solyc04g063380.2.1	Tomato	cytosol	66.67	67.58
GSMUA_Achr6P18620_001	Banana	cytosol	66.67	67.03
CDX88336	Canola	cytosol	58.81	66.98
GSMUA_AchrUn_...	Banana	cytosol	65.58	65.76
AT1G21410.1	Thale cress	cytosol	63.96	65.56
Bra016422.1-P	Field mustard	cytosol	62.33	65.16
CDX87549	Canola	cytosol	62.6	65.07
Bra015699.1-P	Field mustard	cytosol	62.06	64.69
CDY67973	Canola	plasma membrane	62.6	63.81
CDX96592	Canola	cytosol	62.6	63.81
CDX79184	Canola	cytosol	61.25	62.95
KRH53355	Soybean	cytosol	63.41	62.9
Bra003692.1-P	Field mustard	cytosol	60.98	62.67
CDX68067	Canola	cytosol	60.7	62.4
AT1G77000.1	Thale cress	cytosol	60.43	61.94
KRH15905	Soybean	cytosol	61.79	61.46
KRH18090	Soybean	cytosol	62.33	61.33
CDY58589	Canola	extracellular	21.41	60.31
VIT_18s0001g15010.t01	Wine grape	mitochondrion	69.65	60.05
CDY58588	Canola	extracellular	20.87	58.33
KXG30697	Sorghum	cytosol	21.14	18.48
EES09509	Sorghum	cytosol	16.8	16.06
EES04933	Sorghum	cytosol	14.63	15.47
EES08900	Sorghum	cytosol	23.58	13.7
OQU89081	Sorghum	cytosol	18.7	13.14
KXG29052	Sorghum	plastid	23.31	13.03
KXG26667	Sorghum	plastid	16.26	12.82
EER90022	Sorghum	cytosol, plastid	21.68	12.78
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	21.95	12.37
KXG23663	Sorghum	cytosol	21.95	12.24
KXG22793	Sorghum	nucleus	22.22	11.78
EES07863	Sorghum	nucleus	21.41	11.43

Protein Annotations

MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	EntrezGene:8058475	UniProt:C5YY77	EnsemblPlants:EES18256	ProteinID:EES18256
ProteinID:EES18256.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF13516	PANTHER:PTHR44673	PANTHER:PTHR44673:SF2
SMART:SM00367	EnsemblPlantsGene:SORBI_3009G143300	SUPFAM:SSF52047	unigene:Sbi.2146	UniParc:UPI0001A8878A	RefSeq:XP_002439826.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:50075428..50080318

Molecular Weight (calculated)

39769.0 Da

IEP (calculated)

7.940

GRAVY (calculated)

0.053

Length

369 amino acids

Sequence
(BLAST)

001: MVSGRPGNGE LDAWFKSLMV TSSSERGQAG SGGPAPTLSG WKDLPMELLV RIISTVGDDR IVIVASGVCT GWRDALGWGV TNLSLTWCKQ SMNNLMISLA
101: HKFTKLQVLT LRQNKPQLED SAVESVANYC HDLRELDLSR SFRLSDRSLY ALAHGCPRLT RLNISGCSNF SDTALIYLTC HCKHLKCLNL CGCGKAATDR
201: ALQAIAQNCG QLQSLNLGWC DDVTDKGVTS LASGCPDLRA VDLCGCVLIT DESVVALANG CPHLRSLGLY FCQNITDRAM YSLANSRVKS KCGRWDAVKD
301: GLANLNISQC TALTPPAVQA VCDSFPALHT CPERHSLIIS GCLSLTSVHC ACALHPHRAA RALMANHAY

Best Arabidopsis Sequence Match ( AT1G21410.1 )
(BLAST)

001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH

Arabidopsis Description

SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.