CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019677_P001	Maize	cytosol	90.48	90.48
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	82.48	82.16
TraesCS5A01G161400.1	Wheat	cytosol, plastid	82.29	81.97
TraesCS5B01G158800.1	Wheat	plastid	82.1	81.78
HORVU5Hr1G050420.1	Barley	plastid	82.1	78.08
GSMUA_Achr2P05250_001	Banana	cytosol	48.0	51.85
VIT_18s0001g09940.t01	Wine grape	plastid	51.81	50.28
Solyc04g078490.1.1	Tomato	cytosol	50.29	49.44
KRH15408	Soybean	plastid	51.62	49.36
AT1G47056.1	Thale cress	cytosol, plastid	48.19	48.84
CDY43846	Canola	plastid	47.24	48.25
Bra032213.1-P	Field mustard	plastid	47.24	48.25
CDY25663	Canola	plastid	47.05	48.05
CDX81326	Canola	cytosol	47.62	47.71
KXG26667	Sorghum	plastid	42.29	47.44
CDY18646	Canola	cytosol	47.24	47.33
CDX83114	Canola	cytosol	44.76	47.28
KRH05631	Soybean	plastid	50.67	47.25
Bra037120.1-P	Field mustard	cytosol	47.24	47.15
AT5G67250.1	Thale cress	cytosol	47.05	46.87
Bra029994.1-P	Field mustard	cytosol	45.14	46.38
CDX68575	Canola	cytosol	44.76	45.99
VIT_07s0129g01110.t01	Wine grape	plastid	48.95	45.65
KRH28425	Soybean	cytosol	45.71	45.63
KRH04530	Soybean	cytosol	46.48	45.27
AT3G50080.1	Thale cress	cytosol	44.76	45.02
KRH77049	Soybean	cytosol	44.57	44.83
Solyc03g044220.1.1	Tomato	cytosol	46.86	44.81
PGSC0003DMT400053918	Potato	cytosol	46.86	44.81
Solyc02g092990.1.1	Tomato	plastid	46.67	44.55
PGSC0003DMT400064250	Potato	mitochondrion	46.48	44.36
KRH57971	Soybean	cytosol	46.48	43.65
AT4G07400.1	Thale cress	nucleus	45.71	43.32
PGSC0003DMT400008648	Potato	cytosol	12.95	40.72
KRH52037	Soybean	cytosol	29.52	38.37
GSMUA_Achr9P18840_001	Banana	plastid	49.9	35.89
PGSC0003DMT400091765	Potato	cytosol	48.0	35.69
CDY01426	Canola	cytosol	47.81	23.18
CDY12824	Canola	nucleus	47.62	22.94
KXG30697	Sorghum	cytosol	17.9	22.27
EES04933	Sorghum	cytosol	14.29	21.49
KRH61346	Soybean	cytosol	26.48	19.91
EES18256	Sorghum	cytosol, nucleus, plastid	13.14	18.7
EES09509	Sorghum	cytosol	13.14	17.88
EES08900	Sorghum	cytosol	21.52	17.8
EES03986	Sorghum	cytosol	12.76	17.59
EER90022	Sorghum	cytosol, plastid	20.0	16.77
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	20.38	16.34
KXG29052	Sorghum	plastid	20.38	16.21
KXG23663	Sorghum	cytosol	20.38	16.16
KXG22793	Sorghum	nucleus	20.95	15.8
EES07863	Sorghum	nucleus	20.76	15.77

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EntrezGene:8063875	UniProt:C5X7C4	ProteinID:EER98568.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	EnsemblPlants:OQU89081	ProteinID:OQU89081	ProteinID:OQU89081.1
PFAM:PF12937	PANTHER:PTHR44356	PANTHER:PTHR44356:SF2	SMART:SM00367	EnsemblPlantsGene:SORBI_3002G143900	SUPFAM:SSF52047
SUPFAM:SSF81383	unigene:Sbi.5626	UniParc:UPI0001A8426A	RefSeq:XP_002462047.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:25860277..25864284

Molecular Weight (calculated)

55916.0 Da

IEP (calculated)

8.801

GRAVY (calculated)

0.002

Length

525 amino acids

Sequence
(BLAST)

001: MGQCPSVPRR RKPPPLPPSP ALSAPPQVLC SIAEAAGEDH TADLPEELLA LVFGLLGSGD RKRCSLVCRR WLAVEAASRL RLALDARAPL LADSALPRLL
101: ARFPAVSKLA LKCDRRAESV GDPALAQVAD RLGPGLRRLK LRSLRAVTDD GVAALAAAAA NLRKLSVGSC AFGAKGIEAV LRSCLHLEEL SVKRLRGLAE
201: SEPVSVSGPR LQSLSLKELY NGQCFSYLIT QSPNLKTLKI IRCSGDWDIV LQDVPRDSLL AELHLEKLQV SDRGVAALIG LEVLYLAKAP EVTDVGLAEL
301: AAKSPCLRKL HVDGWKANRI GDRGLAAVAQ KCASLQELVL IGVNLTSSSL ELIAANCSSL ERLALCGSDT FGDAEISCVA AKCAALRKLC IKACPVSDAG
401: MNKLAEGCPR LVKVKVKKCR RVTFECAERL RASRNGTLTV NFDTPGGAGE LQDGRSVDES GVLDNAGSDV LPEDLDDRIV PELLSGSSGR PSRWKARMGS
501: LISRSLSVSI FRRQPRGGCS TSHES

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.