Factsheet for TraesCS5A01G161400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	98.1	98.1
TraesCS5B01G158800.1	Wheat	plastid	97.72	97.72
HORVU5Hr1G050420.1	Barley	plastid	97.15	92.75
OQU89081	Sorghum	cytosol	81.97	82.29
Zm00001d019677_P001	Maize	cytosol	78.94	79.24
GSMUA_Achr2P05250_001	Banana	cytosol	47.25	51.23
Solyc04g078490.1.1	Tomato	cytosol	51.23	50.56
VIT_18s0001g09940.t01	Wine grape	plastid	51.61	50.28
KRH15408	Soybean	plastid	51.04	49.0
AT1G47056.1	Thale cress	cytosol, plastid	48.01	48.84
CDY43846	Canola	plastid	46.68	47.86
Bra032213.1-P	Field mustard	plastid	46.68	47.86
CDY25663	Canola	plastid	46.49	47.67
KRH05631	Soybean	plastid	50.85	47.6
CDX83114	Canola	cytosol	43.64	46.28
CDY18646	Canola	cytosol	45.92	46.18
CDX81326	Canola	cytosol	45.92	46.18
AT5G67250.1	Thale cress	cytosol	45.92	45.92
Bra037120.1-P	Field mustard	cytosol	45.73	45.82
Solyc02g092990.1.1	Tomato	plastid	47.63	45.64
PGSC0003DMT400064250	Potato	mitochondrion	47.63	45.64
VIT_07s0129g01110.t01	Wine grape	plastid	48.58	45.47
Bra029994.1-P	Field mustard	cytosol	44.02	45.4
CDX68575	Canola	cytosol	43.83	45.21
AT3G50080.1	Thale cress	cytosol	44.21	44.64
PGSC0003DMT400053918	Potato	cytosol	46.49	44.63
KRH28425	Soybean	cytosol	44.4	44.49
Solyc03g044220.1.1	Tomato	cytosol	46.3	44.44
KRH04530	Soybean	cytosol	44.59	43.6
KRH77049	Soybean	cytosol	43.07	43.49
AT4G07400.1	Thale cress	nucleus	44.59	42.42
TraesCS2A01G359900.1	Wheat	cytosol	43.45	42.33
KRH57971	Soybean	cytosol	44.59	42.04
PGSC0003DMT400008648	Potato	cytosol	13.28	41.92
KRH52037	Soybean	cytosol	29.22	38.12
PGSC0003DMT400091765	Potato	cytosol	48.96	36.54
GSMUA_Achr9P18840_001	Banana	plastid	48.2	34.79
CDY01426	Canola	cytosol	46.87	22.81
CDY12824	Canola	nucleus	46.87	22.66
TraesCS6A01G234100.2	Wheat	cytosol	15.94	20.14
TraesCS3A01G067800.1	Wheat	cytosol	13.09	19.66
KRH61346	Soybean	cytosol	25.81	19.48
TraesCS1A01G264900.1	Wheat	cytosol	13.66	19.46
TraesCS3A01G407700.1	Wheat	cytosol	13.28	18.42
TraesCS6A01G181900.1	Wheat	cytosol	20.49	16.64
TraesCS7A01G377500.1	Wheat	cytosol	19.92	16.18
TraesCS5A01G150800.2	Wheat	mitochondrion	20.87	16.13
TraesCS4A01G230600.2	Wheat	plastid	12.33	16.05
TraesCS4A01G142500.3	Wheat	plastid	18.98	15.9
TraesCS5A01G091800.2	Wheat	cytosol	18.22	14.52

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44356	PANTHER:PTHR44356:SF2
SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	EnsemblPlantsGene:TraesCS5A01G161400	EnsemblPlants:TraesCS5A01G161400.1	SEG:seg

Description

No Description!

Coordinates

chr5A:+:343596733..343598532

Molecular Weight (calculated)

55835.8 Da

IEP (calculated)

8.849

GRAVY (calculated)

0.046

Length

527 amino acids

Sequence
(BLAST)

001: MGQCPSAPRY HHHRKPPPTP PSPTAQAASP RFCSAAAAED AAAEADYTSD LPEELLAVVF GLLGSGDRKR CSLVCRRWLA TEASSRLRLA LDARAPLLAA
101: APAILARFSS ISKLALKCDR RAESVGDPAL ALVAHRLGPG LRRLKLRSVR AVTDHGVAAL AAAAINLRKL SVGSCTFGAK GIEAVLRSCP QLEELSVKRL
201: RGLADSEPIT VSSPRLQSLA LKELYNGQCF SCLITCSPNL KTLKIIRCSG DWDPVLQAIP QGSLLAELHL EKLQVSDLGV AALCGLEVLY LAKAPEVTDV
301: GLAALATKSP RLRKLHVDGW KANRIGDRGL ATVAQKCAAL QELVLIGVNL TSASLELIAA NCPTLERLAL CGSDTFGDAE ISCVATKCAS LRKLCIKACP
401: VSDAGMDKLA AGCPRLVKVK VKKCRRVTFE CAERLRASRH GALAVNFDTP GGAGELQDAS VDESGVLENA GSDVVQDDFD DQIGVPDLLC GTSGRPSGWK
501: ARIVALISRS LSVSMFRRRP RGSSHNS

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.