Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43846 | Canola | plastid | 82.63 | 83.27 |
| Bra032213.1-P | Field mustard | plastid | 82.63 | 83.27 |
| CDY25663 | Canola | plastid | 82.43 | 83.07 |
| Solyc04g078490.1.1 | Tomato | cytosol | 63.13 | 61.24 |
| VIT_18s0001g09940.t01 | Wine grape | plastid | 63.9 | 61.18 |
| KRH15408 | Soybean | plastid | 64.48 | 60.84 |
| KRH05631 | Soybean | plastid | 63.51 | 58.44 |
| PGSC0003DMT400008648 | Potato | cytosol | 18.53 | 57.48 |
| AT4G07400.1 | Thale cress | nucleus | 57.72 | 53.97 |
| GSMUA_Achr3P28280_001 | Banana | plastid | 50.0 | 52.54 |
| AT5G67250.1 | Thale cress | cytosol | 53.09 | 52.18 |
| GSMUA_Achr4P12920_001 | Banana | plastid | 48.65 | 49.32 |
| GSMUA_Achr8P15580_001 | Banana | cytosol | 38.61 | 49.02 |
| GSMUA_Achr9P22570_001 | Banana | plastid | 41.31 | 48.64 |
| GSMUA_Achr2P05250_001 | Banana | cytosol | 45.37 | 48.35 |
| GSMUA_Achr9P11380_001 | Banana | cytosol | 41.7 | 48.21 |
| OQU89081 | Sorghum | cytosol | 48.84 | 48.19 |
| AT3G50080.1 | Thale cress | cytosol | 48.46 | 48.08 |
| TraesCS5A01G161400.1 | Wheat | cytosol, plastid | 48.84 | 48.01 |
| Zm00001d019677_P001 | Maize | cytosol | 48.65 | 48.0 |
| TraesCS5D01G166300.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 48.65 | 47.82 |
| TraesCS5B01G158800.1 | Wheat | plastid | 48.46 | 47.63 |
| Os04t0505700-01 | Rice | cytosol, mitochondrion | 36.87 | 46.02 |
| HORVU5Hr1G050420.1 | Barley | plastid | 48.65 | 45.65 |
| TraesCS2D01G358900.1 | Wheat | mitochondrion, plastid | 38.22 | 44.9 |
| PGSC0003DMT400091765 | Potato | cytosol | 59.85 | 43.91 |
| Zm00001d003103_P001 | Maize | plastid | 44.02 | 43.85 |
| KXG26667 | Sorghum | plastid | 39.58 | 43.8 |
| Zm00001d025812_P001 | Maize | plastid | 43.82 | 41.58 |
| Zm00001d025808_P001 | Maize | plastid | 43.63 | 41.39 |
| TraesCS2A01G359900.1 | Wheat | cytosol | 43.05 | 41.22 |
| HORVU0Hr1G005070.1 | Barley | plastid | 43.05 | 39.96 |
| GSMUA_Achr9P18840_001 | Banana | plastid | 48.84 | 34.66 |
| AT5G23340.1 | Thale cress | cytosol | 17.76 | 22.72 |
| AT4G15475.1 | Thale cress | cytosol | 22.78 | 19.34 |
| AT3G07550.2 | Thale cress | cytosol | 14.09 | 18.48 |
| AT2G25490.1 | Thale cress | plastid | 22.01 | 18.15 |
| AT5G25350.1 | Thale cress | cytosol | 21.81 | 18.14 |
| AT3G58530.1 | Thale cress | cytosol | 11.78 | 17.28 |
| AT5G01720.1 | Thale cress | vacuole | 20.46 | 15.94 |
| AT1G21410.1 | Thale cress | cytosol | 11.0 | 15.83 |
| AT1G77000.1 | Thale cress | cytosol | 10.81 | 15.56 |
| AT5G27920.1 | Thale cress | cytosol, extracellular, peroxisome | 18.92 | 15.26 |
| Zm00001d028552_P001 | Maize | cytosol, extracellular, mitochondrion, plastid | 6.37 | 14.86 |
| Zm00001d037295_P001 | Maize | mitochondrion | 6.76 | 14.34 |
| Zm00001d039723_P001 | Maize | cytosol, extracellular, plastid | 6.18 | 13.73 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | Gene3D:3.80.10.10 | EntrezGene:841121 | ProteinID:AAG50633.1 | ProteinID:AEE32134.1 |
| ArrayExpress:AT1G47056 | EnsemblPlantsGene:AT1G47056 | RefSeq:AT1G47056 | TAIR:AT1G47056 | RefSeq:AT1G47056-TAIR-G | EnsemblPlants:AT1G47056.1 |
| TAIR:AT1G47056.1 | ncoils:Coil | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR001611 | InterPro:IPR001810 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp | RefSeq:NP_175151.1 | PFAM:PF12937 | PFAM:PF13516 |
| PO:PO:0000293 | PO:PO:0002000 | PO:PO:0007131 | PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009031 |
| PFscan:PS50181 | PANTHER:PTHR44356 | PANTHER:PTHR44356:SF2 | UniProt:Q9C626 | SMART:SM00367 | SUPFAM:SSF52047 |
| UniParc:UPI00000AA3A0 | Symbol:VFB1 | SEG:seg | : | : | : |
Description
VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
Coordinates
chr1:-:17275890..17277839
Molecular Weight (calculated)
56499.9 Da
IEP (calculated)
8.633
GRAVY (calculated)
-0.034
Length
518 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.