Factsheet for Os04t0505700-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	87.47	82.31
KXG26667	Sorghum	plastid	86.51	76.71
TraesCS2A01G359900.1	Wheat	cytosol	87.47	67.1
HORVU0Hr1G005070.1	Barley	plastid	87.71	65.23
GSMUA_Achr9P11380_001	Banana	cytosol	55.42	51.34
GSMUA_Achr8P15580_001	Banana	cytosol	48.92	49.75
PGSC0003DMT400008648	Potato	cytosol	19.76	49.1
Solyc04g078490.1.1	Tomato	cytosol	49.88	38.76
Bra032213.1-P	Field mustard	plastid	46.75	37.74
CDY43846	Canola	plastid	46.75	37.74
VIT_18s0001g09940.t01	Wine grape	plastid	48.92	37.52
CDY25663	Canola	plastid	46.27	37.35
AT1G47056.1	Thale cress	cytosol, plastid	46.02	36.87
KRH15408	Soybean	plastid	48.43	36.61
CDX81326	Canola	cytosol	45.3	35.88
KRH28425	Soybean	cytosol	45.3	35.74
KRH05631	Soybean	plastid	48.19	35.52
KRH77049	Soybean	cytosol	44.58	35.44
VIT_07s0129g01110.t01	Wine grape	plastid	47.95	35.35
CDY18646	Canola	cytosol	44.34	35.11
Bra037120.1-P	Field mustard	cytosol	44.34	34.98
AT5G67250.1	Thale cress	cytosol	44.34	34.91
CDX83114	Canola	cytosol	41.2	34.41
CDX68575	Canola	cytosol	42.17	34.25
Bra029994.1-P	Field mustard	cytosol	41.93	34.05
Solyc02g092990.1.1	Tomato	plastid	45.06	34.0
AT4G07400.1	Thale cress	nucleus	45.3	33.94
PGSC0003DMT400064250	Potato	mitochondrion	44.82	33.82
PGSC0003DMT400053918	Potato	cytosol	44.58	33.7
KRH04530	Soybean	cytosol	43.61	33.58
Solyc03g044220.1.1	Tomato	cytosol	44.34	33.52
KRH57971	Soybean	cytosol	44.34	32.92
AT3G50080.1	Thale cress	cytosol	41.2	32.76
KRH52037	Soybean	cytosol	30.6	31.44
PGSC0003DMT400091765	Potato	cytosol	49.16	28.9
Os02t0636400-01	Rice	cytosol	10.36	21.5
Os09t0113000-01	Rice	cytosol, nucleus	3.86	19.75
CDY01426	Canola	cytosol	45.3	17.36
CDY12824	Canola	nucleus	45.3	17.25
KRH61346	Soybean	cytosol	26.75	15.9
Os12t0552700-01	Rice	cytosol, peroxisome	13.98	15.55
Os05t0425700-01	Rice	cytosol	13.98	15.43
Os01t0881900-01	Rice	cytosol	13.98	15.3
Os02t0281150-01	Rice	cytosol	13.01	15.17
Os02t0200900-01	Rice	cytosol	21.93	13.79
Os11t0264200-01	Rice	cytosol	12.53	13.65
Os06t0605900-01	Rice	cytosol	19.52	12.92
Os10t0148800-01	Rice	cytosol	14.7	12.25
Os12t0108500-01	Rice	cytosol, plasma membrane, plastid	19.76	11.76
Os11t0641200-01	Rice	cytosol	6.27	7.26
Os11t0108932-01	Rice	nucleus	3.13	4.17

Protein Annotations

EnsemblPlants:Os04t0505700-01	EnsemblPlantsGene:Os04g0505700	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR44356	PANTHER:PTHR44356:SF4	ProteinID:BAF15168.1	ProteinID:BAS89978.1	SEG:seg	SMART:SM00367
SUPFAM:SSF52047	UniParc:UPI0000DD9176	UniProt:Q0JBW9	MapMan:19.2.2.8.1.4.6	:	:

Description

F-box protein 227Leucine-rich repeat, cysteine-containing subtype containing protein. (Os04t0505700-01)

Coordinates

chr4:-:25244494..25245978

Molecular Weight (calculated)

44102.0 Da

IEP (calculated)

8.497

GRAVY (calculated)

0.125

Length

415 amino acids

Sequence
(BLAST)

001: ARGSGTDSLS DDGARQVAAA LPSARLARLK LRGLRQLSDD GLASLAGATP VIRKLSVASC SFGPKAFVAV LRSCPLLEDL SVKRLRGLPD TAGATTAITE
101: EILFPPASSL RSVCLKDLYS ALCFVPLVAS SPNLRSLKIL RCSGSWDLPL EVIAARVPGL VELHLEKLQV GDRGLSAVSA CANLEVLFLV KTPECTDAGI
201: ISVAEKCHKL RKLHIDGWRT NRIGDHGLMA VARGCPDLQE LVLIGVNPTV QSLRMLGEHC RSLERLALCG CETVGDPEII CLAERCAALK KLCIKGCPVS
301: DRGMWALNGG CPSLVKVKLK RCRGVSYECI ENLKVVRGGS FSISLDIVLE RDAGGAIENG GQEAGQVQIT ELTDQMAAMD LPTNASNAQS SAQASSRMRS
401: VMSALRRRFG NPPAL

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.