Factsheet for Os06t0605900-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0587000-01
Os01t0935300-02
Os02t0689132-00
Os05t0193900-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25490.1	Os02t0689132-00	AT2G27050.1	14675533
AT2G25490.1	Os02t0689132-00	AT3G20770.1	14675532
AT2G25490.1	Os02t0689132-00	AT3G20770.1	14675533
AT2G25490.1	Os01t0587000-01	AT3G28715.1	21798944
AT2G25490.1	Os01t0935300-02	AT4G02570.1	14675533
AT2G25490.1	Os05t0193900-00	AT4G02570.1	14675533
AT5G25350.1	Os02t0689132-00	AT3G20770.1	14675532
AT5G25350.1	Os02t0689132-00	AT3G20770.1	14675533
AT5G25350.1	Os01t0935300-02	AT4G02570.1	14675533
AT5G25350.1	Os05t0193900-00	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G278800.1	Wheat	cytosol	81.34	78.83
TraesCS7A01G377500.1	Wheat	cytosol	81.5	78.74
TraesCS7D01G373800.1	Wheat	cytosol	81.5	78.49
HORVU7Hr1G090240.1	Barley	cytosol	66.99	77.92
EER90022	Sorghum	cytosol, plastid	75.76	75.88
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	27.75	65.41
Os02t0200900-01	Rice	cytosol	68.42	65.0
Zm00001d000408_P001	Maize	cytosol	74.32	62.72
Zm00001d036880_P003	Maize	cytosol	72.89	62.09
HORVU5Hr1G029670.1	Barley	mitochondrion	49.76	60.82
HORVU5Hr1G000950.4	Barley	plastid	40.83	57.27
GSMUA_Achr6P05220_001	Banana	cytosol	51.67	49.54
GSMUA_Achr4P30680_001	Banana	cytosol	50.08	48.16
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	49.76	47.71
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	50.72	47.6
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	50.56	47.46
PGSC0003DMT400007545	Potato	cytosol	47.53	46.78
KRH03688	Soybean	cytosol	47.05	46.17
Solyc12g009560.1.1	Tomato	cytosol	46.41	45.68
KRH20255	Soybean	cytosol	46.25	45.38
VIT_11s0016g05410.t01	Wine grape	cytosol	47.85	45.25
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	45.77	44.7
KRH62989	Soybean	cytosol	46.25	44.62
KRH15886	Soybean	cytosol	45.61	44.41
KRH04870	Soybean	cytosol	19.14	44.12
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	44.82	43.84
KRH05167	Soybean	cytosol	42.42	43.61
VIT_04s0008g05470.t01	Wine grape	cytosol	46.25	43.48
AT2G25490.1	Thale cress	plastid	43.22	43.15
KRH52439	Soybean	cytosol, nucleus, peroxisome	43.86	43.1
Bra036542.1-P	Field mustard	cytosol	42.11	42.86
CDX87090	Canola	cytosol	41.95	42.69
KRH61771	Soybean	cytosol	43.22	42.61
CDY19807	Canola	cytosol	41.79	42.53
CDX88173	Canola	cytosol	41.63	41.96
Solyc08g060810.2.1	Tomato	plastid	44.5	41.95
AT5G25350.1	Thale cress	cytosol	41.63	41.89
PGSC0003DMT400040977	Potato	nucleus	44.5	41.7
Bra009835.1-P	Field mustard	cytosol	41.31	41.64
CDX80503	Canola	cytosol	41.15	41.55
CDY35358	Canola	cytosol	41.15	41.41
Bra034254.1-P	Field mustard	cytosol	40.99	41.32
PGSC0003DMT400042949	Potato	cytosol	36.04	40.94
CDX76980	Canola	cytosol	38.92	40.73
Solyc06g049010.1.1	Tomato	plastid	35.89	36.29
PGSC0003DMT400089433	Potato	mitochondrion	26.48	36.17
Solyc06g030610.1.1	Tomato	cytosol	14.67	33.58
PGSC0003DMT400094835	Potato	cytosol	12.92	33.06
Solyc06g030620.1.1	Tomato	cytosol	9.41	29.35
Os02t0636400-01	Rice	cytosol	8.45	26.5
Os02t0281150-01	Rice	cytosol	13.88	24.44
Os12t0552700-01	Rice	cytosol, peroxisome	14.19	23.86
Os04t0505700-01	Rice	cytosol, mitochondrion	12.92	19.52
Os11t0264200-01	Rice	cytosol	11.64	19.16
Os12t0108500-01	Rice	cytosol, plasma membrane, plastid	21.21	19.08
Os11t0641200-01	Rice	cytosol	10.37	18.16
Os05t0425700-01	Rice	cytosol	10.85	18.09
Os01t0881900-01	Rice	cytosol	10.85	17.94
Os10t0148800-01	Rice	cytosol	14.19	17.87
Os11t0108932-01	Rice	nucleus	7.5	15.06
Os09t0113000-01	Rice	cytosol, nucleus	0.8	6.17

Protein Annotations

MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	EMBL:AK065140	ProteinID:BAD35544.1	ProteinID:BAS98525.1
InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	EnsemblPlantsGene:Os06g0605900	EnsemblPlants:Os06t0605900-01	PFAM:PF13516
PANTHER:PTHR44327	PANTHER:PTHR44327:SF3	UniProt:Q69X07	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0000403820	SEG:seg	:	:	:	:

Description

F-box protein 316Leucine-rich repeat, cysteine-containing subtype containing protein. (Os06t0605900-01);Leucine-rich repeat, cysteine-containing subtype containing protein. (Os06t0605900-02)

Coordinates

chr6:+:24033805..24036789

Molecular Weight (calculated)

66071.1 Da

IEP (calculated)

6.193

GRAVY (calculated)

0.199

Length

627 amino acids

Sequence
(BLAST)

001: MPPFHDYRDG GVLVMEPAAS AALFGGVRSR KRARVTAVPP CGFVSAAAEA VEVVEEEGLT AAKRQKQQQQ QREAPSLDAL PDECLFEILR RVKGARARCA
101: SAAVSRRWLA LLGGIRSSEI KREPAAAAVP DLNQVFVDED EEEEDEFEVP LGGGCSSERC LEGREATDVG LMAVAVADAL RGSLESLVIR GSHPTRGVTD
201: AGISAAARGC PSLLSLALWH VPQGCPDLKV VTVEACPGVA DEGLKAIGRC CAKLQSVNIK NCAHVGDQGV SGLVCSAAAS LAKVRLQGLS ITDASLSVIG
301: YYGKAITDLT LARLPAVGER GFWVMANALG LQKLRFMSVS SCPGVTDLAL ASIAKFCPSL KQLNLKKCGQ VSDGRLKDFA ESAKVLESLQ IEECNKVTLM
401: GILAFLLNCS PKFKALSLVK CNGIKDICSA PAQLPLCKSL RSLTIKDCPG FTDASLAVVG MICPQLENVD LSGLGAVTDN GLLPLIKSSE SGLVHVDLNG
501: CENLTDATVS ALVKAHGSSL ARLSLEGCSR ITDASLFAIS EGCTDLAELD LSNCMVSDYG VAVLASARQL KLRVLSLSGC LKVTQKSVPF LGSMSASLEG
601: LNLQFNFIGN HNIASLEKQL WWCDILA

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.