Factsheet for Solyc08g060810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g009170.2.1
Solyc01g099290.2.1
Solyc06g073720.1.1
Solyc06g073730.1.1
Solyc10g081530.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25490.1	Solyc01g009170.2.1	AT2G27050.1	14675533
AT2G25490.1	Solyc06g073720.1.1	AT2G27050.1	14675533
AT2G25490.1	Solyc06g073730.1.1	AT2G27050.1	14675533
AT2G25490.1	Solyc01g009170.2.1	AT3G20770.1	14675532
AT2G25490.1	Solyc06g073720.1.1	AT3G20770.1	14675532
AT2G25490.1	Solyc06g073730.1.1	AT3G20770.1	14675532
AT2G25490.1	Solyc01g009170.2.1	AT3G20770.1	14675533
AT2G25490.1	Solyc06g073720.1.1	AT3G20770.1	14675533
AT2G25490.1	Solyc06g073730.1.1	AT3G20770.1	14675533
AT2G25490.1	Solyc10g081530.1.1	AT3G28715.1	21798944
AT2G25490.1	Solyc01g099290.2.1	AT4G02570.1	14675533
AT5G25350.1	Solyc01g009170.2.1	AT3G20770.1	14675532
AT5G25350.1	Solyc06g073720.1.1	AT3G20770.1	14675532
AT5G25350.1	Solyc06g073730.1.1	AT3G20770.1	14675532
AT5G25350.1	Solyc01g009170.2.1	AT3G20770.1	14675533
AT5G25350.1	Solyc06g073720.1.1	AT3G20770.1	14675533
AT5G25350.1	Solyc06g073730.1.1	AT3G20770.1	14675533
AT5G25350.1	Solyc01g099290.2.1	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040977	Potato	nucleus	95.49	94.92
VIT_04s0008g05470.t01	Wine grape	cytosol	64.06	63.87
KRH15886	Soybean	cytosol	60.75	62.73
KRH05167	Soybean	cytosol	55.94	60.98
KRH61771	Soybean	cytosol	56.99	59.59
Solyc12g009560.1.1	Tomato	cytosol	56.54	59.03
KRH52439	Soybean	cytosol, nucleus, peroxisome	56.54	58.93
Solyc06g049010.1.1	Tomato	plastid	54.89	58.87
AT2G25490.1	Thale cress	plastid	55.19	58.44
CDX76980	Canola	cytosol	52.48	58.26
CDY35358	Canola	cytosol	53.08	56.66
Bra034254.1-P	Field mustard	cytosol	52.93	56.59
AT5G25350.1	Thale cress	cytosol	52.48	56.02
CDX88173	Canola	cytosol	52.33	55.95
CDX80503	Canola	cytosol	52.18	55.88
Bra009835.1-P	Field mustard	cytosol	52.18	55.79
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	53.68	55.69
CDX87090	Canola	cytosol	51.43	55.52
Bra036542.1-P	Field mustard	cytosol	51.28	55.36
CDY19807	Canola	cytosol	50.83	54.87
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	52.18	53.06
GSMUA_Achr6P05220_001	Banana	cytosol	51.73	52.6
GSMUA_Achr4P30680_001	Banana	cytosol	51.28	52.3
Solyc06g030610.1.1	Tomato	cytosol	21.2	51.46
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	50.53	50.3
HORVU7Hr1G090240.1	Barley	cytosol	40.3	49.72
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	19.7	49.25
Zm00001d015778_P001	Maize	cytosol	47.37	48.99
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	48.12	48.85
Zm00001d053642_P001	Maize	cytosol	47.67	48.69
TraesCS6D01G169200.1	Wheat	cytosol	47.22	48.38
TraesCS6B01G210700.1	Wheat	cytosol	47.07	48.23
TraesCS6A01G181900.1	Wheat	cytosol	47.07	48.23
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	48.42	48.2
EER90022	Sorghum	cytosol, plastid	44.96	47.76
HORVU6Hr1G038430.3	Barley	plastid	46.77	47.63
Os02t0200900-01	Rice	cytosol	46.92	47.27
TraesCS7B01G278800.1	Wheat	cytosol	45.86	47.14
TraesCS7D01G373800.1	Wheat	cytosol	45.86	46.85
TraesCS7A01G377500.1	Wheat	cytosol	45.71	46.84
Solyc06g030620.1.1	Tomato	cytosol	14.14	46.77
Os06t0605900-01	Rice	cytosol	41.95	44.5
Zm00001d036880_P003	Maize	cytosol	44.66	40.35
HORVU5Hr1G029670.1	Barley	mitochondrion	31.13	40.35
HORVU5Hr1G000950.4	Barley	plastid	26.77	39.82
Zm00001d000408_P001	Maize	cytosol	43.91	39.3
Solyc04g063380.2.1	Tomato	cytosol	13.53	24.73
Solyc06g005380.2.1	Tomato	cytosol	12.63	24.28
Solyc06g054440.2.1	Tomato	mitochondrion	19.25	23.93
Solyc04g078490.1.1	Tomato	cytosol	18.95	23.6
Solyc04g008980.2.1	Tomato	cytosol	14.89	23.57
Solyc10g076290.1.1	Tomato	cytosol	23.61	23.26
Solyc02g092990.1.1	Tomato	plastid	18.5	22.36
Solyc03g044220.1.1	Tomato	cytosol	18.35	22.22
Solyc01g099970.2.1	Tomato	extracellular	20.45	21.97
Solyc06g007680.1.1	Tomato	cytosol	13.08	21.75

Protein Annotations

MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	UniProt:K4CKM6
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44327
PANTHER:PTHR44327:SF1	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc08g060810.2	EnsemblPlants:Solyc08g060810.2.1
UniParc:UPI000276CA6E	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:45559358..45562558

Molecular Weight (calculated)

71173.9 Da

IEP (calculated)

7.409

GRAVY (calculated)

0.195

Length

665 amino acids

Sequence
(BLAST)

001: MSKVFNFSGD HGGTVYPSPK ESSLFLSLRN HVDVYFPPCK RSRVAVPFVF SEKKHKLSSI DVLPDECLFE VLRRLSDGKD RSASACVSKR WLMLLSSIRG
101: DETVISNPNP SLETEERSIQ TALVKSVDCV KKGEVVDSNA AEVAEAESQD IEGEGHLSRC LDGKKATDVR LAAIAVGTPG HGGLGKLSIR GSNPIRGVTD
201: TGLKVIARGC PSLRALSLWN VSSVSDEGLT EIAQGCHLLE KLDLCQCPAI TDMSLMAIAK NCPNLTSLTI ESCSKIGNET LQAVGRFCPK LKFVSLKNCP
301: LIGDQGIASL FSSAGHVLTK VKLHALNISD IALAVIGHYG IAITDIALIG LQNINERGFW VMGNGQGLQK LRSLAITACH GVTDLGLEAL GKGCPNLKLF
401: CLRKCTILSD NGLVAFAKGS VALENLQLEE CHRITQAGFV GVLLSCGEKL KVLSMVKCFG VKELACRFPS VLPCNSLQSL SIRNCPGVGN ATLAIMGRLC
501: PKLTHLELSG LLQVTDEGLF PLVQSCEAGL VKVNLSGCVN VTDRSVSFIT ELHGGSLESL NVDECRYVTD MTLLAISNNC WLLKELDVSK CGITDSGVAS
601: LASTVRLNLQ ILSLSGCSML SDKSVPFLQK LGQTLMGLNI QHCNGVSSSC VDLLLEQLWR CDILS

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.