Factsheet for Solyc10g081530.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008230.2.1
Solyc02g014090.2.1
Solyc03g110960.2.1
Solyc04g009180.1.1
Solyc06g071960.2.1
Solyc11g039960.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28715.1	Solyc01g008230.2.1	AT5G08330.1	21798944
AT3G28715.1	Solyc04g009180.1.1	AT5G08330.1	21798944
AT3G28715.1	Solyc02g014090.2.1	AT5G23130.1	21798944
AT3G28715.1	Solyc11g039960.1.1	AT5G23130.1	21798944
AT3G28715.1	Solyc03g110960.2.1	AT5G63310.1	21798944
AT3G28715.1	Solyc06g071960.2.1	AT5G63310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072522	Potato	cytosol, mitochondrion	100.0	100.0
VIT_14s0108g00080.t01	Wine grape	cytosol, extracellular	94.59	94.59
KRH01133	Soybean	cytosol	94.02	94.02
KRH40128	Soybean	endoplasmic reticulum	94.02	94.02
GSMUA_Achr1P11740_001	Banana	cytosol	81.48	93.77
GSMUA_Achr6P35890_001	Banana	cytosol	81.2	93.44
EES03178	Sorghum	cytosol	92.88	92.88
AT3G28715.1	Thale cress	cytosol	91.74	91.74
Os01t0587000-01	Rice	plasma membrane	91.45	91.45
AT3G28710.1	Thale cress	cytosol	91.17	91.17
TraesCS3A01G210400.2	Wheat	cytosol, golgi	91.17	91.17
TraesCS3B01G241000.1	Wheat	cytosol	90.88	90.88
TraesCS3D01G213200.1	Wheat	cytosol	90.88	90.88
HORVU3Hr1G050990.2	Barley	vacuole	90.31	90.31
CDY46357	Canola	cytosol	18.23	88.89
Zm00001d011238_P001	Maize	cytosol	45.3	61.87

Protein Annotations

Gene3D:1.10.132.50	Gene3D:1.20.1690.10	MapMan:24.1.1.1.3	InterPro:ATPase_V0-cplx_csu/dsu	InterPro:ATPase_V0-cplx_dsu	InterPro:ATPase_su_C-like
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005764	GO:GO:0005765	GO:GO:0005773	GO:GO:0006810	GO:GO:0006811
GO:GO:0007034	GO:GO:0007035	GO:GO:0008150	GO:GO:0008553	GO:GO:0009987	GO:GO:0015078
GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0016471	GO:GO:0016787	GO:GO:0019725
GO:GO:0033179	GO:GO:0046961	InterPro:IPR035067	UniProt:K4D340	PFAM:PF01992	PIRSF:PIRSF018497
PANTHER:PTHR11028	PANTHER:PTHR11028:SF0	SUPFAM:SSF103486	EnsemblPlantsGene:Solyc10g081530.1	EnsemblPlants:Solyc10g081530.1.1	UniParc:UPI00027698EA
InterPro:V-type_ATPase_suC	:	:	:	:	:

Description

V-type proton ATPase subunit [Source:UniProtKB/TrEMBL;Acc:K4D340]

Coordinates

chr10:-:62573113..62578006

Molecular Weight (calculated)

40755.7 Da

IEP (calculated)

4.649

GRAVY (calculated)

-0.188

Length

351 amino acids

Sequence
(BLAST)

001: MYGFEALTFN IHSGYLEAIV RGHRSGLLTA ADYNNLCQCE TLDDIKMHLS ATEYGPYLQN EPSPLHTTTI VEKCTVKLVD EFNHMLCQAT EPLSTFLEYI
101: RYGHMIDNVV LIVTGTLHER DVQELLEKCH PLGMFDSIAS LAVAQNMREL YRLVLVDTPL APYFSECITS EDLDDMNIEI MRNTLYKAYL EDFYRFCQKL
201: GGATAEIMSD LLSFEADRRA VNITINSIGT ELTRDDRRKL YSNFGLLYPY GHEELAICED IDQVRGVMEK YPPYQSIFSK LSYGESQMLD KAFYEEEVKR
301: LCLSFEQQFH YGVFFSYIRL REQEIRNLMW ISECVSQNQK TRVHDSVVFI F

Best Arabidopsis Sequence Match ( AT3G28715.1 )
(BLAST)

001: MYGFEALTFN IHGGYLEAIV RGHRAGLLTT ADYNNLCQCE NLDDIKMHLS ATKYGPYLQN EPSPLHTTTI VEKCTLKLVD DYKHMLCQAT EPMSTFLEYI
101: RYGHMIDNVV LIVTGTLHER DVQELIEKCH PLGMFDSIAT LAVAQNMREL YRLVLVDTPL APYFSECLTS EDLDDMNIEI MRNTLYKAYL EDFYNFCQKL
201: GGATAEIMSD LLAFEADRRA VNITINSIGT ELTREDRKKL YSNFGLLYPY GHEELAICED IDQVRGVMEK YPPYQAIFSK MSYGESQMLD KAFYEEEVRR
301: LCLAFEQQFH YAVFFAYMRL REQEIRNLMW ISECVAQNQK SRIHDSVVYM F

Arabidopsis Description

VHA-D2V-type proton ATPase subunit d2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.