Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- vacuole 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G28715.1 | Thale cress | cytosol | 99.15 | 99.15 |
| CDY46357 | Canola | cytosol | 19.37 | 94.44 |
| KRH01133 | Soybean | cytosol | 93.73 | 93.73 |
| KRH40128 | Soybean | endoplasmic reticulum | 93.73 | 93.73 |
| GSMUA_Achr1P11740_001 | Banana | cytosol | 81.2 | 93.44 |
| GSMUA_Achr6P35890_001 | Banana | cytosol | 80.91 | 93.11 |
| VIT_14s0108g00080.t01 | Wine grape | cytosol, extracellular | 92.88 | 92.88 |
| PGSC0003DMT400072522 | Potato | cytosol, mitochondrion | 91.17 | 91.17 |
| Solyc10g081530.1.1 | Tomato | nucleus, plastid | 91.17 | 91.17 |
| EES03178 | Sorghum | cytosol | 89.74 | 89.74 |
| Os01t0587000-01 | Rice | plasma membrane | 89.74 | 89.74 |
| TraesCS3A01G210400.2 | Wheat | cytosol, golgi | 88.89 | 88.89 |
| TraesCS3B01G241000.1 | Wheat | cytosol | 88.6 | 88.6 |
| TraesCS3D01G213200.1 | Wheat | cytosol | 88.6 | 88.6 |
| HORVU3Hr1G050990.2 | Barley | vacuole | 88.03 | 88.03 |
| Zm00001d011238_P001 | Maize | cytosol | 44.44 | 60.7 |
Protein Annotations
| Gene3D:1.10.132.50 | Gene3D:1.20.1690.10 | MapMan:24.1.1.1.3 | EntrezGene:822502 | UniProt:A0A178VK72 | ProteinID:AEE77480.1 |
| ArrayExpress:AT3G28710 | EnsemblPlantsGene:AT3G28710 | RefSeq:AT3G28710 | TAIR:AT3G28710 | RefSeq:AT3G28710-TAIR-G | EnsemblPlants:AT3G28710.1 |
| TAIR:AT3G28710.1 | InterPro:ATPase_V0-cplx_csu/dsu | InterPro:ATPase_V0-cplx_dsu | InterPro:ATPase_su_C-like | EMBL:AY039864 | EMBL:AY077656 |
| EMBL:AY142622 | Unigene:At.24667 | ProteinID:BAB02186.1 | GO:GO:0000325 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005764 |
| GO:GO:0005765 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006810 |
| GO:GO:0006811 | GO:GO:0007034 | GO:GO:0007035 | GO:GO:0008150 | GO:GO:0008553 | GO:GO:0009506 |
| GO:GO:0009987 | GO:GO:0015078 | GO:GO:0015991 | GO:GO:0015992 | GO:GO:0016020 | GO:GO:0016471 |
| GO:GO:0016787 | GO:GO:0019725 | GO:GO:0033179 | GO:GO:0046961 | InterPro:IPR035067 | RefSeq:NP_189512.1 |
| ProteinID:OAP05463.1 | PFAM:PF01992 | PIRSF:PIRSF018497 | PO:PO:0000005 | PO:PO:0000293 | PO:PO:0005052 |
| PANTHER:PTHR11028 | PANTHER:PTHR11028:SF0 | UniProt:Q9LJI5 | SUPFAM:SSF103486 | UniParc:UPI0000000B98 | InterPro:V-type_ATPase_suC |
Description
VHA-D1V-type proton ATPase subunit d1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJI5]
Coordinates
chr3:-:10772871..10775809
Molecular Weight (calculated)
40794.1 Da
IEP (calculated)
4.816
GRAVY (calculated)
-0.199
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MYGFEALTFN IHGGYLEAIV RGHRAGLLTT ADYNNLCQCE NLDDIKMHLS ATKYGSYLQN EPSPLHTTTI VEKCTLKLVD DYKHMLCQAT EPMSTFLEYI
101: RYGHMIDNVV LIVTGTLHER DVQELIEKCH PLGMFDSIAT LAVAQNMREL YRLVLVDTPL APYFSECLTS EDLDDMNIEI MRNTLYKAYL EDFYKFCQKL
201: GGATAEIMSD LLAFEADRRA VNITINSIGT ELTREDRKKL YSNFGLLYPY GHEELAICED IDQVRGVMEK YPPYQAIFSK MSYGESQMLD KAFYEEEVRR
301: LCLAFEQQFH YAVFFAYMRL REQEIRNLMW ISECVAQNQK SRIHDSVVYM F
101: RYGHMIDNVV LIVTGTLHER DVQELIEKCH PLGMFDSIAT LAVAQNMREL YRLVLVDTPL APYFSECLTS EDLDDMNIEI MRNTLYKAYL EDFYKFCQKL
201: GGATAEIMSD LLAFEADRRA VNITINSIGT ELTREDRKKL YSNFGLLYPY GHEELAICED IDQVRGVMEK YPPYQAIFSK MSYGESQMLD KAFYEEEVRR
301: LCLAFEQQFH YAVFFAYMRL REQEIRNLMW ISECVAQNQK SRIHDSVVYM F
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.