CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89011
EER94055
EER95660
EES07800
EES16135

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28715.1	EES07800	AT5G08330.1	21798944
AT3G28715.1	EER89011	AT5G23130.1	21798944
AT3G28715.1	EER94055	AT5G23130.1	21798944
AT3G28715.1	EER95660	AT5G23130.1	21798944
AT3G28715.1	EES16135	AT5G63310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0587000-01	Rice	plasma membrane	97.15	97.15
TraesCS3A01G210400.2	Wheat	cytosol, golgi	96.3	96.3
TraesCS3D01G213200.1	Wheat	cytosol	96.01	96.01
TraesCS3B01G241000.1	Wheat	cytosol	96.01	96.01
HORVU3Hr1G050990.2	Barley	vacuole	95.44	95.44
GSMUA_Achr1P11740_001	Banana	cytosol	82.34	94.75
GSMUA_Achr6P35890_001	Banana	cytosol	81.2	93.44
KRH01133	Soybean	cytosol	92.88	92.88
KRH40128	Soybean	endoplasmic reticulum	92.88	92.88
PGSC0003DMT400072522	Potato	cytosol, mitochondrion	92.88	92.88
Solyc10g081530.1.1	Tomato	nucleus, plastid	92.88	92.88
VIT_14s0108g00080.t01	Wine grape	cytosol, extracellular	92.31	92.31
AT3G28710.1	Thale cress	cytosol	89.74	89.74
AT3G28715.1	Thale cress	cytosol	89.46	89.46
CDX95344	Canola	cytosol	20.23	77.17
Zm00001d011238_P001	Maize	cytosol	49.29	67.32
CDY17733	Canola	mitochondrion	12.82	33.09

Protein Annotations

Gene3D:1.10.132.50	Gene3D:1.20.1690.10	MapMan:24.1.1.1.3	EntrezGene:8078231	InterPro:ATPase_V0-cplx_csu/dsu	InterPro:ATPase_V0-cplx_dsu
InterPro:ATPase_su_C-like	UniProt:C5XPF9	EnsemblPlants:EES03178	ProteinID:EES03178	ProteinID:EES03178.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005764	GO:GO:0005765	GO:GO:0005773	GO:GO:0006810	GO:GO:0006811	GO:GO:0007034
GO:GO:0007035	GO:GO:0008150	GO:GO:0008553	GO:GO:0009987	GO:GO:0015078	GO:GO:0015991
GO:GO:0015992	GO:GO:0016020	GO:GO:0016471	GO:GO:0016787	GO:GO:0019725	GO:GO:0033179
GO:GO:0046961	InterPro:IPR035067	PFAM:PF01992	PIRSF:PIRSF018497	PANTHER:PTHR11028	PANTHER:PTHR11028:SF0
EnsemblPlantsGene:SORBI_3003G200800	SUPFAM:SSF103486	unigene:Sbi.42	UniParc:UPI0001A4C8F2	InterPro:V-type_ATPase_suC	RefSeq:XP_002458058.1

Description

hypothetical protein

Coordinates

chr3:-:52855959..52859789

Molecular Weight (calculated)

40745.8 Da

IEP (calculated)

4.595

GRAVY (calculated)

-0.174

Length

351 amino acids

Sequence
(BLAST)

001: MYGWEMLSFN IHDGFLEAIV RGNRSGLLTA ADYNNLCQCE TLDDIKMHLT ATEYGPYLQN EPSPLHTTTI VEKCTLKLVD EYKHMLCQAT EPLSTFLQYI
101: TYGHMIDNVV LIVTGTLHER DVNELLEKCH PLGMFDSIAS LAVAQNMREL YRLVLVDTPL APYFSECITS EDLDDMNIEI MRNTLYKAYL EDFYKFCQKL
201: GGATAEIMCD LLSFEADRRA VNITINSIGT ELTRDDRRKL YSNFGLLYPY GHEELAVCED VDQVRGAMEK YPPYQSIFSR ISYGESQMLD KAFYEEEVKR
301: LCLSFEQQFH YAVFFAYIRL REQEIRNLMW ISECVAQNQK SRVHDSVVFI F

Best Arabidopsis Sequence Match ( AT3G28715.1 )
(BLAST)

001: MYGFEALTFN IHGGYLEAIV RGHRAGLLTT ADYNNLCQCE NLDDIKMHLS ATKYGPYLQN EPSPLHTTTI VEKCTLKLVD DYKHMLCQAT EPMSTFLEYI
101: RYGHMIDNVV LIVTGTLHER DVQELIEKCH PLGMFDSIAT LAVAQNMREL YRLVLVDTPL APYFSECLTS EDLDDMNIEI MRNTLYKAYL EDFYNFCQKL
201: GGATAEIMSD LLAFEADRRA VNITINSIGT ELTREDRKKL YSNFGLLYPY GHEELAICED IDQVRGVMEK YPPYQAIFSK MSYGESQMLD KAFYEEEVRR
301: LCLAFEQQFH YAVFFAYMRL REQEIRNLMW ISECVAQNQK SRIHDSVVYM F

Arabidopsis Description

VHA-D2V-type proton ATPase subunit d2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.