CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17733	Canola	mitochondrion	51.09	34.56
EES03178	Sorghum	cytosol	77.17	20.23
HORVU3Hr1G050990.2	Barley	vacuole	77.17	20.23
TraesCS3A01G210400.2	Wheat	cytosol, golgi	77.17	20.23
TraesCS3B01G241000.1	Wheat	cytosol	77.17	20.23
TraesCS3D01G213200.1	Wheat	cytosol	77.17	20.23
Os01t0587000-01	Rice	plasma membrane	76.09	19.94
Zm00001d011238_P001	Maize	cytosol	47.83	17.12
GSMUA_Achr1P11740_001	Banana	cytosol	54.35	16.39
GSMUA_Achr6P35890_001	Banana	cytosol	53.26	16.07
CDY46357	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:24.1.1.1.3	GO:A0A078E478	InterPro:ATPase_V0-cplx_csu/dsu	InterPro:ATPase_V0-cplx_dsu	InterPro:ATPase_su_C-like	EnsemblPlants:CDX95344
ProteinID:CDX95344	ProteinID:CDX95344.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015078	GO:GO:0015991	GO:GO:0016020	GO:GO:0033179	EnsemblPlantsGene:GSBRNA2T00101024001
PFAM:PF01992	PANTHER:PTHR11028	PANTHER:PTHR11028:SF0	SUPFAM:SSF103486	UniParc:UPI0004EF46F1	:

Description

BnaC04g28140D

Coordinates

chrLK031888:-:464678..466453

Molecular Weight (calculated)

10719.8 Da

IEP (calculated)

6.331

GRAVY (calculated)

-0.499

Length

92 amino acids

Sequence
(BLAST)

1: MRWFMEGCTD SRRHHAGLLT TADYNNLCQC ENLDDIKMHL SATKYGSYLQ NEPSPLHTTT IVEKCTLKLV DDYKHMLCQA TEPMSTFLEY IR

Best Arabidopsis Sequence Match ( AT3G28710.1 )
(BLAST)

001: MYGFEALTFN IHGGYLEAIV RGHRAGLLTT ADYNNLCQCE NLDDIKMHLS ATKYGSYLQN EPSPLHTTTI VEKCTLKLVD DYKHMLCQAT EPMSTFLEYI
101: RYGHMIDNVV LIVTGTLHER DVQELIEKCH PLGMFDSIAT LAVAQNMREL YRLVLVDTPL APYFSECLTS EDLDDMNIEI MRNTLYKAYL EDFYKFCQKL
201: GGATAEIMSD LLAFEADRRA VNITINSIGT ELTREDRKKL YSNFGLLYPY GHEELAICED IDQVRGVMEK YPPYQAIFSK MSYGESQMLD KAFYEEEVRR
301: LCLAFEQQFH YAVFFAYMRL REQEIRNLMW ISECVAQNQK SRIHDSVVYM F

Arabidopsis Description

VHA-D1V-type proton ATPase subunit d1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.