Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P11740_001 | Banana | cytosol | 60.31 | 50.82 |
| GSMUA_Achr6P35890_001 | Banana | cytosol | 59.53 | 50.16 |
| EES03178 | Sorghum | cytosol | 67.32 | 49.29 |
| CDX95344 | Canola | cytosol | 17.12 | 47.83 |
| Os01t0587000-01 | Rice | plasma membrane | 64.2 | 47.01 |
| TraesCS3A01G210400.2 | Wheat | cytosol, golgi | 64.2 | 47.01 |
| TraesCS3D01G213200.1 | Wheat | cytosol | 63.81 | 46.72 |
| TraesCS3B01G241000.1 | Wheat | cytosol | 63.81 | 46.72 |
| HORVU3Hr1G050990.2 | Barley | vacuole | 63.81 | 46.72 |
| KRH01133 | Soybean | cytosol | 63.42 | 46.44 |
| KRH40128 | Soybean | endoplasmic reticulum | 63.42 | 46.44 |
| VIT_14s0108g00080.t01 | Wine grape | cytosol, extracellular | 63.03 | 46.15 |
| Solyc10g081530.1.1 | Tomato | nucleus, plastid | 61.87 | 45.3 |
| PGSC0003DMT400072522 | Potato | cytosol, mitochondrion | 61.87 | 45.3 |
| AT3G28715.1 | Thale cress | cytosol | 60.7 | 44.44 |
| AT3G28710.1 | Thale cress | cytosol | 60.7 | 44.44 |
| CDY17733 | Canola | mitochondrion | 15.95 | 30.15 |
Protein Annotations
| MapMan:24.1.1.1.3 | UniProt:A0A1D6FYA0 | ProteinID:AQK96315.1 | InterPro:ATPase_V0-cplx_csu/dsu | InterPro:ATPase_V0-cplx_dsu | InterPro:ATPase_su_C-like |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015078 | GO:GO:0015991 | GO:GO:0016020 | GO:GO:0033179 | PFAM:PF01992 | PANTHER:PTHR11028 |
| PANTHER:PTHR11028:SF0 | SUPFAM:SSF103486 | UniParc:UPI000845897B | EnsemblPlantsGene:Zm00001d011238 | EnsemblPlants:Zm00001d011238_P001 | EnsemblPlants:Zm00001d011238_T001 |
Description
V-type proton ATPase subunit d2
Coordinates
chr8:-:144163335..144166542
Molecular Weight (calculated)
29682.5 Da
IEP (calculated)
6.094
GRAVY (calculated)
-0.361
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHLHPSTTS SKSGEIKVGW PHARWAWTLA RWDLAPWLSV LARGDAPDYG GLKPRMTDDK RCNNEARCNA MIVSRSSLEP SPLHTTTIVE KCTLKLVDDY
101: KHMLCQATEP LSTFLQYITL VLVDTPLAPY FSECITSEDL DDMNIEIMRN LSTKHILRTS TNFARYPYGH EELVVCEDVD QVRSAMEKYP PYQSIFSRIS
201: YGKSQMLDKA FYEEEVKRLC LSFEQLREQE IRNLMWISEC VAQNQKSQVH DSVVFIF
101: KHMLCQATEP LSTFLQYITL VLVDTPLAPY FSECITSEDL DDMNIEIMRN LSTKHILRTS TNFARYPYGH EELVVCEDVD QVRSAMEKYP PYQSIFSRIS
201: YGKSQMLDKA FYEEEVKRLC LSFEQLREQE IRNLMWISEC VAQNQKSQVH DSVVFIF
001: MYGFEALTFN IHGGYLEAIV RGHRAGLLTT ADYNNLCQCE NLDDIKMHLS ATKYGSYLQN EPSPLHTTTI VEKCTLKLVD DYKHMLCQAT EPMSTFLEYI
101: RYGHMIDNVV LIVTGTLHER DVQELIEKCH PLGMFDSIAT LAVAQNMREL YRLVLVDTPL APYFSECLTS EDLDDMNIEI MRNTLYKAYL EDFYKFCQKL
201: GGATAEIMSD LLAFEADRRA VNITINSIGT ELTREDRKKL YSNFGLLYPY GHEELAICED IDQVRGVMEK YPPYQAIFSK MSYGESQMLD KAFYEEEVRR
301: LCLAFEQQFH YAVFFAYMRL REQEIRNLMW ISECVAQNQK SRIHDSVVYM F
101: RYGHMIDNVV LIVTGTLHER DVQELIEKCH PLGMFDSIAT LAVAQNMREL YRLVLVDTPL APYFSECLTS EDLDDMNIEI MRNTLYKAYL EDFYKFCQKL
201: GGATAEIMSD LLAFEADRRA VNITINSIGT ELTREDRKKL YSNFGLLYPY GHEELAICED IDQVRGVMEK YPPYQAIFSK MSYGESQMLD KAFYEEEVRR
301: LCLAFEQQFH YAVFFAYMRL REQEIRNLMW ISECVAQNQK SRIHDSVVYM F
Arabidopsis Description
VHA-D1V-type proton ATPase subunit d1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJI5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.