Factsheet for PGSC0003DMT400072522

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400027432
PGSC0003DMT400039453
PGSC0003DMT400042166
PGSC0003DMT400050883
PGSC0003DMT400069352

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28715.1	PGSC0003DMT400042166	AT5G08330.1	21798944
AT3G28715.1	PGSC0003DMT400027432	AT5G23130.1	21798944
AT3G28715.1	PGSC0003DMT400050883	AT5G23130.1	21798944
AT3G28715.1	PGSC0003DMT400039453	AT5G63310.1	21798944
AT3G28715.1	PGSC0003DMT400069352	AT5G63310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g081530.1.1	Tomato	nucleus, plastid	100.0	100.0
VIT_14s0108g00080.t01	Wine grape	cytosol, extracellular	94.59	94.59
KRH01133	Soybean	cytosol	94.02	94.02
KRH40128	Soybean	endoplasmic reticulum	94.02	94.02
GSMUA_Achr1P11740_001	Banana	cytosol	81.48	93.77
GSMUA_Achr6P35890_001	Banana	cytosol	81.2	93.44
EES03178	Sorghum	cytosol	92.88	92.88
AT3G28715.1	Thale cress	cytosol	91.74	91.74
Os01t0587000-01	Rice	plasma membrane	91.45	91.45
AT3G28710.1	Thale cress	cytosol	91.17	91.17
TraesCS3A01G210400.2	Wheat	cytosol, golgi	91.17	91.17
TraesCS3B01G241000.1	Wheat	cytosol	90.88	90.88
TraesCS3D01G213200.1	Wheat	cytosol	90.88	90.88
HORVU3Hr1G050990.2	Barley	vacuole	90.31	90.31
CDY46357	Canola	cytosol	18.23	88.89
Zm00001d011238_P001	Maize	cytosol	45.3	61.87

Protein Annotations

Gene3D:1.10.132.50	Gene3D:1.20.1690.10	EntrezGene:102595807	MapMan:24.1.1.1.3	InterPro:ATPase_V0-cplx_csu/dsu	InterPro:ATPase_V0-cplx_dsu
InterPro:ATPase_su_C-like	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811
GO:GO:0008150	GO:GO:0015078	GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0033179
InterPro:IPR035067	UniProt:M1CQG4	PFAM:PF01992	EnsemblPlantsGene:PGSC0003DMG400028218	PGSC:PGSC0003DMG400028218	EnsemblPlants:PGSC0003DMT400072522
PIRSF:PIRSF018497	PANTHER:PTHR11028	PANTHER:PTHR11028:SF0	SUPFAM:SSF103486	UniParc:UPI00027698EA	InterPro:V-type_ATPase_suC
RefSeq:XP_006339198.1	:	:	:	:	:

Description

Vacuolar ATP synthase subunit ac39 [Source:PGSC_GENE;Acc:PGSC0003DMG400028218]

Coordinates

chr10:+:56449757..56456211

Molecular Weight (calculated)

40755.7 Da

IEP (calculated)

4.649

GRAVY (calculated)

-0.188

Length

351 amino acids

Sequence
(BLAST)

001: MYGFEALTFN IHSGYLEAIV RGHRSGLLTA ADYNNLCQCE TLDDIKMHLS ATEYGPYLQN EPSPLHTTTI VEKCTVKLVD EFNHMLCQAT EPLSTFLEYI
101: RYGHMIDNVV LIVTGTLHER DVQELLEKCH PLGMFDSIAS LAVAQNMREL YRLVLVDTPL APYFSECITS EDLDDMNIEI MRNTLYKAYL EDFYRFCQKL
201: GGATAEIMSD LLSFEADRRA VNITINSIGT ELTRDDRRKL YSNFGLLYPY GHEELAICED IDQVRGVMEK YPPYQSIFSK LSYGESQMLD KAFYEEEVKR
301: LCLSFEQQFH YGVFFSYIRL REQEIRNLMW ISECVSQNQK TRVHDSVVFI F

Best Arabidopsis Sequence Match ( AT3G28715.1 )
(BLAST)

001: MYGFEALTFN IHGGYLEAIV RGHRAGLLTT ADYNNLCQCE NLDDIKMHLS ATKYGPYLQN EPSPLHTTTI VEKCTLKLVD DYKHMLCQAT EPMSTFLEYI
101: RYGHMIDNVV LIVTGTLHER DVQELIEKCH PLGMFDSIAT LAVAQNMREL YRLVLVDTPL APYFSECLTS EDLDDMNIEI MRNTLYKAYL EDFYNFCQKL
201: GGATAEIMSD LLAFEADRRA VNITINSIGT ELTREDRKKL YSNFGLLYPY GHEELAICED IDQVRGVMEK YPPYQAIFSK MSYGESQMLD KAFYEEEVRR
301: LCLAFEQQFH YAVFFAYMRL REQEIRNLMW ISECVAQNQK SRIHDSVVYM F

Arabidopsis Description

VHA-D2V-type proton ATPase subunit d2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.