Factsheet for GSMUA_Achr6P35890_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr2P10710_001
GSMUA_Achr4P29860_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28715.1	GSMUA_Achr11P...	AT5G08330.1	21798944
AT3G28715.1	GSMUA_Achr11P...	AT5G23130.1	21798944
AT3G28715.1	GSMUA_Achr11P...	AT5G23130.1	21798944
AT3G28715.1	GSMUA_Achr2P10710_001	AT5G23130.1	21798944
AT3G28715.1	GSMUA_Achr4P29860_001	AT5G23130.1	21798944
AT3G28715.1	GSMUA_AchrUn_...	AT5G63310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P11740_001	Banana	cytosol	98.36	98.36
KRH40128	Soybean	endoplasmic reticulum	96.72	84.05
KRH01133	Soybean	cytosol	96.72	84.05
VIT_14s0108g00080.t01	Wine grape	cytosol, extracellular	95.74	83.19
AT3G28715.1	Thale cress	cytosol	94.1	81.77
EES03178	Sorghum	cytosol	93.44	81.2
PGSC0003DMT400072522	Potato	cytosol, mitochondrion	93.44	81.2
Solyc10g081530.1.1	Tomato	nucleus, plastid	93.44	81.2
TraesCS3A01G210400.2	Wheat	cytosol, golgi	93.11	80.91
AT3G28710.1	Thale cress	cytosol	93.11	80.91
Os01t0587000-01	Rice	plasma membrane	92.79	80.63
TraesCS3B01G241000.1	Wheat	cytosol	92.79	80.63
TraesCS3D01G213200.1	Wheat	cytosol	92.79	80.63
HORVU3Hr1G050990.2	Barley	vacuole	92.13	80.06
Zm00001d011238_P001	Maize	cytosol	50.16	59.53
CDX95344	Canola	cytosol	16.07	53.26
CDY17733	Canola	mitochondrion	11.8	26.47

Protein Annotations

Gene3D:1.10.132.50	Gene3D:1.20.1690.10	MapMan:24.1.1.1.3	InterPro:ATPase_V0-cplx_csu/dsu	InterPro:ATPase_V0-cplx_dsu	InterPro:ATPase_su_C-like
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015078
GO:GO:0015991	GO:GO:0016020	GO:GO:0033179	EnsemblPlantsGene:GSMUA_Achr6G35890_001	EnsemblPlants:GSMUA_Achr6P35890_001	EnsemblPlants:GSMUA_Achr6T35890_001
InterPro:IPR035067	UniProt:M0TD32	PFAM:PF01992	PIRSF:PIRSF018497	PANTHER:PTHR11028	PANTHER:PTHR11028:SF0
SUPFAM:SSF103486	UniParc:UPI000296F307	InterPro:V-type_ATPase_suC	:	:	:

Description

V-type proton ATPase subunit d2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G35890_001]

Coordinates

chr6:-:34012115..34018319

Molecular Weight (calculated)

35547.6 Da

IEP (calculated)

4.535

GRAVY (calculated)

-0.168

Length

305 amino acids

Sequence
(BLAST)

001: MHLSATEYGP YLQNEPSPLH TTTVVEKCTL KLVDEYKHML CQATEPLSTF LEYITYGYMI DNVVLIVTGT LHERDVQELL EKCHPLGMFD SIATLAVAQN
101: MRELYRLVLV DTPLAPYFSE CITSEDLDDM NIEIMRNTLY KAYLEDFYNF CQKLGGATAE IMSDLLAFEA DRRAVNITIN SIGTELTRDD RRKLYSNFGL
201: LYPYGHEELA ISEDIDQVRS VMEKYPPYQS IFAKISYGES QMLDKAFYEE EVKRLCLAFE QQFHYAVFFA YMRLREQEIR NLMWISECVA QNQKSRIHDS
301: VVFIF

Best Arabidopsis Sequence Match ( AT3G28715.1 )
(BLAST)

001: MYGFEALTFN IHGGYLEAIV RGHRAGLLTT ADYNNLCQCE NLDDIKMHLS ATKYGPYLQN EPSPLHTTTI VEKCTLKLVD DYKHMLCQAT EPMSTFLEYI
101: RYGHMIDNVV LIVTGTLHER DVQELIEKCH PLGMFDSIAT LAVAQNMREL YRLVLVDTPL APYFSECLTS EDLDDMNIEI MRNTLYKAYL EDFYNFCQKL
201: GGATAEIMSD LLAFEADRRA VNITINSIGT ELTREDRKKL YSNFGLLYPY GHEELAICED IDQVRGVMEK YPPYQAIFSK MSYGESQMLD KAFYEEEVRR
301: LCLAFEQQFH YAVFFAYMRL REQEIRNLMW ISECVAQNQK SRIHDSVVYM F

Arabidopsis Description

VHA-D2V-type proton ATPase subunit d2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.