Factsheet for VIT_14s0108g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 27664331

msms PMID: 27664331 doi

P Pérez-Bermúdez, J Blesa, JM Soriano, A Marcilla

Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g02130.t01
VIT_17s0000g10280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28715.1	VIT_01s0011g02130.t01	AT5G23130.1	21798944
AT3G28715.1	VIT_17s0000g10280.t01	AT5G63310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P11740_001	Banana	cytosol	83.76	96.39
KRH01133	Soybean	cytosol	96.01	96.01
KRH40128	Soybean	endoplasmic reticulum	96.01	96.01
GSMUA_Achr6P35890_001	Banana	cytosol	83.19	95.74
PGSC0003DMT400072522	Potato	cytosol, mitochondrion	94.59	94.59
Solyc10g081530.1.1	Tomato	nucleus, plastid	94.59	94.59
AT3G28715.1	Thale cress	cytosol	93.45	93.45
CDY46357	Canola	cytosol	19.09	93.06
AT3G28710.1	Thale cress	cytosol	92.88	92.88
EES03178	Sorghum	cytosol	92.31	92.31
TraesCS3A01G210400.2	Wheat	cytosol, golgi	91.45	91.45
Os01t0587000-01	Rice	plasma membrane	91.17	91.17
TraesCS3B01G241000.1	Wheat	cytosol	91.17	91.17
TraesCS3D01G213200.1	Wheat	cytosol	91.17	91.17
HORVU3Hr1G050990.2	Barley	vacuole	90.6	90.6
Zm00001d011238_P001	Maize	cytosol	46.15	63.03

Protein Annotations

Gene3D:1.10.132.50	Gene3D:1.20.1690.10	EntrezGene:100244110	wikigene:100244110	MapMan:24.1.1.1.3	UniProt:A5ACR7
EMBL:AM423345	InterPro:ATPase_V0-cplx_csu/dsu	InterPro:ATPase_V0-cplx_dsu	InterPro:ATPase_su_C-like	ProteinID:CAN79922	ProteinID:CAN79922.1
ProteinID:CCB47511	ProteinID:CCB47511.1	EMBL:FN595239	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005764	GO:GO:0005765
GO:GO:0005773	GO:GO:0006810	GO:GO:0006811	GO:GO:0007034	GO:GO:0007035	GO:GO:0008150
GO:GO:0008553	GO:GO:0009987	GO:GO:0015078	GO:GO:0015991	GO:GO:0015992	GO:GO:0016020
GO:GO:0016471	GO:GO:0016787	GO:GO:0019725	GO:GO:0033179	GO:GO:0046961	InterPro:IPR035067
EntrezGene:LOC100244110	wikigene:LOC100244110	PFAM:PF01992	PIRSF:PIRSF018497	PANTHER:PTHR11028	PANTHER:PTHR11028:SF0
SUPFAM:SSF103486	TIGR:TC52061	UniParc:UPI0001523969	InterPro:V-type_ATPase_suC	ArrayExpress:VIT_14s0108g00080	EnsemblPlantsGene:VIT_14s0108g00080
EnsemblPlants:VIT_14s0108g00080.t01	unigene:Vvi.3279	RefSeq:XP_002282568	RefSeq:XP_002282568.1	:	:

Description

V-type proton ATPase subunit [Source:UniProtKB/TrEMBL;Acc:A5ACR7]

Coordinates

chr14:-:28895798..28901140

Molecular Weight (calculated)

40673.8 Da

IEP (calculated)

4.649

GRAVY (calculated)

-0.193

Length

351 amino acids

Sequence
(BLAST)

001: MYGFEAMTFN IHGGYLEAIV RGHRSGLLTA ADYNNLCQCE TLDDIKMHLS ATEYGPYLQN EPSPLHTTTI VEKCTVKLVD EYKHMLCQAT EPLSTFLEYI
101: TYGHMIDNVV LIVTGTLHER DVQELLEKCH PLGMFDSIAT LAVAQNMREL YRLVLVDTPL APYFSERITS EDLDDMNIEI MRNTLYKAYL EDFYQFCQKL
201: GGATSEIMSD LLAFEADRRA VNITINSIGT ELTRDDRKKL YSNFGLLYPY GHEELAVCED IDQVRGVMEK YPPYQSIFAK MSYGESQMLD KAFYEEEVKR
301: LCLAFEQQFH YGVFFAYMRL REQEIRNLMW ISECVAQNQK SRVHDSVVFI F

Best Arabidopsis Sequence Match ( AT3G28715.1 )
(BLAST)

001: MYGFEALTFN IHGGYLEAIV RGHRAGLLTT ADYNNLCQCE NLDDIKMHLS ATKYGPYLQN EPSPLHTTTI VEKCTLKLVD DYKHMLCQAT EPMSTFLEYI
101: RYGHMIDNVV LIVTGTLHER DVQELIEKCH PLGMFDSIAT LAVAQNMREL YRLVLVDTPL APYFSECLTS EDLDDMNIEI MRNTLYKAYL EDFYNFCQKL
201: GGATAEIMSD LLAFEADRRA VNITINSIGT ELTREDRKKL YSNFGLLYPY GHEELAICED IDQVRGVMEK YPPYQAIFSK MSYGESQMLD KAFYEEEVRR
301: LCLAFEQQFH YAVFFAYMRL REQEIRNLMW ISECVAQNQK SRIHDSVVYM F

Arabidopsis Description

VHA-D2V-type proton ATPase subunit d2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.