CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89746
KRG90619
KRH03909
KRH16591
KRH29144
KRH36141
KRH57193

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28715.1	KRG90619	AT5G08330.1	21798944
AT3G28715.1	KRH36141	AT5G08330.1	21798944
AT3G28715.1	KRH29144	AT5G23130.1	21798944
AT3G28715.1	KRG89746	AT5G63310.1	21798944
AT3G28715.1	KRH03909	AT5G63310.1	21798944
AT3G28715.1	KRH16591	AT5G63310.1	21798944
AT3G28715.1	KRH57193	AT5G63310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01133	Soybean	cytosol	100.0	100.0
GSMUA_Achr1P11740_001	Banana	cytosol	84.33	97.05
GSMUA_Achr6P35890_001	Banana	cytosol	84.05	96.72
VIT_14s0108g00080.t01	Wine grape	cytosol, extracellular	96.01	96.01
AT3G28715.1	Thale cress	cytosol	94.3	94.3
PGSC0003DMT400072522	Potato	cytosol, mitochondrion	94.02	94.02
Solyc10g081530.1.1	Tomato	nucleus, plastid	94.02	94.02
AT3G28710.1	Thale cress	cytosol	93.73	93.73
EES03178	Sorghum	cytosol	92.88	92.88
TraesCS3A01G210400.2	Wheat	cytosol, golgi	92.31	92.31
TraesCS3B01G241000.1	Wheat	cytosol	92.02	92.02
TraesCS3D01G213200.1	Wheat	cytosol	92.02	92.02
Os01t0587000-01	Rice	plasma membrane	91.74	91.74
HORVU3Hr1G050990.2	Barley	vacuole	91.45	91.45
CDY46357	Canola	cytosol	18.52	90.28
Zm00001d011238_P001	Maize	cytosol	46.44	63.42

Protein Annotations

Gene3D:1.10.132.50	Gene3D:1.20.1690.10	EntrezGene:100800553	MapMan:24.1.1.1.3	EMBL:ACUP02006021	EMBL:ACUP02011501
InterPro:ATPase_V0-cplx_csu/dsu	InterPro:ATPase_V0-cplx_dsu	InterPro:ATPase_su_C-like	EnsemblPlantsGene:GLYMA_09G240300	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005764
GO:GO:0005765	GO:GO:0005773	GO:GO:0006810	GO:GO:0006811	GO:GO:0007034	GO:GO:0007035
GO:GO:0008150	GO:GO:0008553	GO:GO:0009987	GO:GO:0015078	GO:GO:0015991	GO:GO:0015992
GO:GO:0016020	GO:GO:0016471	GO:GO:0016787	GO:GO:0019725	GO:GO:0033179	GO:GO:0046961
UniProt:I1L5Z7	InterPro:IPR035067	ProteinID:KRH01133.1	EnsemblPlants:KRH40128	ProteinID:KRH40128	ProteinID:KRH40128.1
PFAM:PF01992	PIRSF:PIRSF018497	PANTHER:PTHR11028	PANTHER:PTHR11028:SF0	SUPFAM:SSF103486	UniParc:UPI000233860F
InterPro:V-type_ATPase_suC	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:46273590..46278139

Molecular Weight (calculated)

40627.7 Da

IEP (calculated)

4.595

GRAVY (calculated)

-0.137

Length

351 amino acids

Sequence
(BLAST)

001: MYGFEALTFN IHGGFLEAIV RGHRAGLLTT ADYNNLCQCE TLDDIKMHLS ATEYGPYLQN EPSPLHTTTI VEKCTLKLVD DYKNMLCQAT EPLSTFLEYI
101: TYGHMIDNVV LIVTGTLHER DVQELLEKCH PLGMFDSIAT LAVAQNMREL YRLVLVDTPL APYFSECITS EDLDDMNIEI MRNTLYKAYL EDFYRFCQKL
201: GGATAEIMSD LLAFEADRRA VNITINSIGT ELTRDDRRKL YSNFGLLYPY GHEELAVCED IDQVRAVMEK YPPYQSIFAK LSYGESQMLD KAFYEEEVKR
301: LCLAFEQQFH YAVFFAYMRL REQEIRNLMW ISECVAQNQK SRVHDSVVFI F

Best Arabidopsis Sequence Match ( AT3G28715.1 )
(BLAST)

001: MYGFEALTFN IHGGYLEAIV RGHRAGLLTT ADYNNLCQCE NLDDIKMHLS ATKYGPYLQN EPSPLHTTTI VEKCTLKLVD DYKHMLCQAT EPMSTFLEYI
101: RYGHMIDNVV LIVTGTLHER DVQELIEKCH PLGMFDSIAT LAVAQNMREL YRLVLVDTPL APYFSECLTS EDLDDMNIEI MRNTLYKAYL EDFYNFCQKL
201: GGATAEIMSD LLAFEADRRA VNITINSIGT ELTREDRKKL YSNFGLLYPY GHEELAICED IDQVRGVMEK YPPYQAIFSK MSYGESQMLD KAFYEEEVRR
301: LCLAFEQQFH YAVFFAYMRL REQEIRNLMW ISECVAQNQK SRIHDSVVYM F

Arabidopsis Description

VHA-D2V-type proton ATPase subunit d2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.