CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89065
KRG89746
KRG91449
KRH03685
KRH03909
KRH13399
KRH16591
KRH20252
KRH20755
KRH24954
KRH35367
KRH50176
KRH57193
KRH62918
KRH71277

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63310.1	KRG91449	AT2G04630.1	21798944
AT5G63310.1	KRH35367	AT2G04630.1	21798944
AT5G63310.1	KRH50176	AT2G43790.1	12506203
AT5G63310.1	KRH71277	AT2G43790.1	12506203
AT5G63310.1	KRG89065	AT3G45640.1	12506203
AT5G63310.1	KRH24954	AT3G45640.1	12506203
AT5G63310.1	KRH13399	AT5G13810.1	21798944
AT5G63310.1	KRH20755	AT5G13810.1	21798944
AT5G63310.1	KRH62918	AT5G13810.1	21798944
AT5G63310.1	KRH03685	AT5G35410.1	17785451
AT5G63310.1	KRH20252	AT5G35410.1	17785451
AT5G63310.1	KRG89746	AT5G63310.1	17785451
AT5G63310.1	KRH03909	AT5G63310.1	17785451
AT5G63310.1	KRH16591	AT5G63310.1	17785451
AT5G63310.1	KRH57193	AT5G63310.1	17785451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57193	Soybean	plastid	92.95	93.78
KRH16591	Soybean	mitochondrion	76.21	88.72
KRG89746	Soybean	plastid	78.85	79.91
PGSC0003DMT400039453	Potato	cytosol	54.19	75.46
VIT_17s0000g10280.t01	Wine grape	plastid	74.89	73.91
PGSC0003DMT400069352	Potato	mitochondrion	68.28	69.2
GSMUA_AchrUn_...	Banana	plastid	70.48	68.38
Solyc06g071960.2.1	Tomato	plastid	66.52	67.41
Solyc03g110960.2.1	Tomato	plastid	69.16	67.38
CDY48138	Canola	plastid	67.4	66.52
AT5G63310.1	Thale cress	plastid	67.4	66.23
TraesCS5B01G098300.2	Wheat	cytosol	49.34	65.12
Bra038621.1-P	Field mustard	plastid	66.52	65.09
CDY41513	Canola	plastid	66.08	64.66
CDX84395	Canola	plastid	66.08	64.66
EES16135	Sorghum	plastid	62.11	63.51
TraesCS5D01G104600.2	Wheat	plastid	60.79	62.73
KRH48835	Soybean	endoplasmic reticulum, nucleus	40.97	62.42
TraesCS5A01G092400.1	Wheat	plastid	60.35	61.99
Os12t0548300-01	Rice	plastid	59.91	61.82
KRH66485	Soybean	endoplasmic reticulum	40.09	61.07
Zm00001d023833_P001	Maize	plastid	62.56	59.92
HORVU5Hr1G024250.1	Barley	mitochondrion	61.67	56.45
KRH41307	Soybean	mitochondrion	41.85	40.25
KRH60038	Soybean	mitochondrion	40.97	39.57
KRH33600	Soybean	cytosol	13.22	38.46
KRH47632	Soybean	cytosol	19.38	36.36
KRH06204	Soybean	endoplasmic reticulum, extracellular	24.23	25.7

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	EntrezGene:100811753	Gene3D:3.30.70.141	MapMan:6.3.2.4
EMBL:ACUP02010367	EMBL:BT094357	UniProt:C6TA28	EnsemblPlantsGene:GLYMA_17G127400	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004550	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0006165	GO:GO:0006183	GO:GO:0006228	GO:GO:0006241
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	InterPro:IPR036850	EnsemblPlants:KRH03909	ProteinID:KRH03909	ProteinID:KRH03909.1	HAMAP:MF_00451
InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334	PRINTS:PR01243
ScanProsite:PS00469	PANTHER:PTHR11349	PANTHER:PTHR11349:SF44	MetaCyc:PWY-6545	MetaCyc:PWY-7176	MetaCyc:PWY-7184
MetaCyc:PWY-7187	MetaCyc:PWY-7197	MetaCyc:PWY-7198	MetaCyc:PWY-7205	MetaCyc:PWY-7210	MetaCyc:PWY-7220
MetaCyc:PWY-7221	MetaCyc:PWY-7222	MetaCyc:PWY-7224	MetaCyc:PWY-7226	MetaCyc:PWY-7227	SMART:SM00562
SUPFAM:SSF54919	UniParc:UPI0001B15F22	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:10172480..10176860

Molecular Weight (calculated)

25243.4 Da

IEP (calculated)

9.402

GRAVY (calculated)

-0.214

Length

227 amino acids

Sequence
(BLAST)

001: MEAVCGSGSS VWVTSSLTRS PKITLPLFRA SYQHLTAFPS QSLLFSYHPS RYANARTLRA RTSSKPIFLP HLIASLEQVD QTYIMVKPDG VQRGLVGEII
101: SRFEKKGFKL TGLKLFQCSK ELAEEHYKDL KQKSFFPKLI DYITSGPVVC MAWEGVGVVA SARKLIGATD PLQAEPGTIR GDLAVQTGRN VVHGSDSPEN
201: GKREIALWFK EGEVCDWTPV QSPWLRE

Best Arabidopsis Sequence Match ( AT5G63310.1 )
(BLAST)

001: MVGATVVSKW TPLCVASPPE RNSASLNPHC SPARVNFRTA LAAFRPQFRL FSRNSASRRR LRASSSAESG IFLPHLVASM EDVEETYIMV KPDGIQRGLV
101: GEIISRFEKK GFKLIGLKMF QCPKELAEEH YKDLSAKSFF PNLIEYITSG PVVCMAWEGV GVVASARKLI GKTDPLQAEP GTIRGDLAVQ TGRNIVHGSD
201: SPENGKREIG LWFKEGELCK WDSALATWLR E

Arabidopsis Description

NDPK2Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:Q0WUG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.