Factsheet for TraesCS5D01G104600.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 16595579
plastid: 18419817

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2B01G194500.1
TraesCS2D01G175800.1
TraesCS4A01G106400.1
TraesCS4B01G197800.1
TraesCS4D01G198600.1
TraesCS5A01G092400.1
TraesCS5B01G098300.2
TraesCS5D01G104600.2
TraesCS7A01G111300.1
TraesCS7A01G377600.1
TraesCS7B01G009200.1
TraesCS7B01G279300.1
TraesCS7D01G106400.1
TraesCS7D01G374400.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63310.1	TraesCS2B01G194500.1	AT2G04630.1	21798944
AT5G63310.1	TraesCS2D01G175800.1	AT2G04630.1	21798944
AT5G63310.1	TraesCS7A01G111300.1	AT2G43790.1	12506203
AT5G63310.1	TraesCS7B01G009200.1	AT2G43790.1	12506203
AT5G63310.1	TraesCS7D01G106400.1	AT2G43790.1	12506203
AT5G63310.1	TraesCS4A01G106400.1	AT3G45640.1	12506203
AT5G63310.1	TraesCS4B01G197800.1	AT3G45640.1	12506203
AT5G63310.1	TraesCS4D01G198600.1	AT3G45640.1	12506203
AT5G63310.1	TraesCS7A01G377600.1	AT5G35410.1	17785451
AT5G63310.1	TraesCS7B01G279300.1	AT5G35410.1	17785451
AT5G63310.1	TraesCS7D01G374400.2	AT5G35410.1	17785451
AT5G63310.1	TraesCS5A01G092400.1	AT5G63310.1	17785451
AT5G63310.1	TraesCS5B01G098300.2	AT5G63310.1	17785451
AT5G63310.1	TraesCS5D01G104600.2	AT5G63310.1	17785451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G092400.1	Wheat	plastid	98.18	97.74
HORVU5Hr1G024250.1	Barley	mitochondrion	97.27	86.29
EES16135	Sorghum	plastid	83.64	82.88
Os12t0548300-01	Rice	plastid	80.45	80.45
Zm00001d023833_P001	Maize	plastid	82.27	76.37
TraesCS5B01G098300.2	Wheat	cytosol	56.82	72.67
PGSC0003DMT400039453	Potato	cytosol	53.64	72.39
Solyc06g071960.2.1	Tomato	plastid	65.91	64.73
PGSC0003DMT400069352	Potato	mitochondrion	65.91	64.73
TraesCS1D01G219000.1	Wheat	plastid	44.09	64.24
VIT_17s0000g10280.t01	Wine grape	plastid	65.91	63.04
GSMUA_AchrUn_...	Banana	plastid	66.36	62.39
KRH57193	Soybean	plastid	63.18	61.78
Solyc03g110960.2.1	Tomato	plastid	65.0	61.37
KRH03909	Soybean	plastid	62.73	60.79
KRH16591	Soybean	mitochondrion	51.82	58.46
AT5G63310.1	Thale cress	plastid	61.36	58.44
CDX84395	Canola	plastid	60.45	57.33
Bra038621.1-P	Field mustard	plastid	60.0	56.9
CDY41513	Canola	plastid	60.0	56.9
CDY48138	Canola	plastid	56.36	53.91
TraesCS1D01G452300.1	Wheat	cytosol	39.09	53.09
KRG89746	Soybean	plastid	53.18	52.23
TraesCS4D01G099200.2	Wheat	cytosol	42.27	48.19
TraesCS7D01G376900.1	Wheat	endoplasmic reticulum	23.64	28.89

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:6.3.2.4	GO:GO:0003674
GO:GO:0003824	GO:GO:0004550	GO:GO:0006139	GO:GO:0006165	GO:GO:0006183	GO:GO:0006228
GO:GO:0006241	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	InterPro:IPR036850	HAMAP:MF_00451	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase
InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334	PRINTS:PR01243	ScanProsite:PS00469	PANTHER:PTHR11349	PANTHER:PTHR11349:SF44
SMART:SM00562	SUPFAM:SSF54919	EnsemblPlantsGene:TraesCS5D01G104600	EnsemblPlants:TraesCS5D01G104600.2	TIGR:cd04413	SEG:seg

Description

No Description!

Coordinates

chr5D:-:118455460..118460002

Molecular Weight (calculated)

23895.5 Da

IEP (calculated)

10.041

GRAVY (calculated)

-0.295

Length

220 amino acids

Sequence
(BLAST)

001: MDAMAAVART GPSLAAAGHR SSATFRPSAS LSFASASSRN RGRVGLSTAG WNQRATRVAR ATPNRIVASS EVEQTYIMIK PDGVQRGLVG EIISRFEKKG
101: FLLKGLKLFQ CPKDLAQEHY KDLKERPFFP NLIDYITSGP VVCMAWEGDG VVASARKLIG ATNPLQAEPG TIRGDLAVQT GRNVVHGSDS PDNGKREIGL
201: WFKEGELAQW ESVQTPWLIE

Best Arabidopsis Sequence Match ( AT5G63310.1 )
(BLAST)

001: MVGATVVSKW TPLCVASPPE RNSASLNPHC SPARVNFRTA LAAFRPQFRL FSRNSASRRR LRASSSAESG IFLPHLVASM EDVEETYIMV KPDGIQRGLV
101: GEIISRFEKK GFKLIGLKMF QCPKELAEEH YKDLSAKSFF PNLIEYITSG PVVCMAWEGV GVVASARKLI GKTDPLQAEP GTIRGDLAVQ TGRNIVHGSD
201: SPENGKREIG LWFKEGELCK WDSALATWLR E

Arabidopsis Description

NDPK2Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:Q0WUG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.