Factsheet for Zm00001d023833_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000407_P001
Zm00001d013780_P001
Zm00001d023833_P001
Zm00001d028711_P003
Zm00001d033099_P001
Zm00001d036215_P003
Zm00001d036879_P001
Zm00001d045310_P003
Zm00001d047758_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63310.1	Zm00001d013780_P001	AT2G04630.1	21798944
AT5G63310.1	Zm00001d033099_P001	AT2G04630.1	21798944
AT5G63310.1	Zm00001d036215_P003	AT2G43790.1	12506203
AT5G63310.1	Zm00001d045310_P003	AT2G43790.1	12506203
AT5G63310.1	Zm00001d028711_P003	AT3G45640.1	12506203
AT5G63310.1	Zm00001d047758_P003	AT3G45640.1	12506203
AT5G63310.1	Zm00001d000407_P001	AT5G35410.1	17785451
AT5G63310.1	Zm00001d036879_P001	AT5G35410.1	17785451
AT5G63310.1	Zm00001d023833_P001	AT5G63310.1	17785451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16135	Sorghum	plastid	90.3	96.4
TraesCS5D01G104600.2	Wheat	plastid	76.37	82.27
TraesCS5A01G092400.1	Wheat	plastid	76.37	81.9
Os12t0548300-01	Rice	plastid	72.15	77.73
HORVU5Hr1G024250.1	Barley	mitochondrion	76.79	73.39
PGSC0003DMT400039453	Potato	cytosol	50.21	73.01
TraesCS5B01G098300.2	Wheat	cytosol	51.9	71.51
PGSC0003DMT400069352	Potato	mitochondrion	61.18	64.73
Solyc06g071960.2.1	Tomato	plastid	60.76	64.29
Zm00001d029968_P001	Maize	plastid	40.08	63.76
KRH57193	Soybean	plastid	60.34	63.56
Zm00001d021526_P001	Maize	cytosol, extracellular	40.93	63.4
GSMUA_AchrUn_...	Banana	plastid	62.45	63.25
VIT_17s0000g10280.t01	Wine grape	plastid	61.18	63.04
KRH03909	Soybean	plastid	59.92	62.56
Solyc03g110960.2.1	Tomato	plastid	59.92	60.94
KRH16591	Soybean	mitochondrion	49.79	60.51
AT5G63310.1	Thale cress	plastid	57.38	58.87
Bra038621.1-P	Field mustard	plastid	54.85	56.03
CDY41513	Canola	plastid	54.85	56.03
CDX84395	Canola	plastid	54.85	56.03
CDY48138	Canola	plastid	53.16	54.78
KRG89746	Soybean	plastid	49.37	52.23
Zm00001d039221_P001	Maize	mitochondrion	37.55	37.55
Zm00001d009774_P001	Maize	mitochondrion	37.55	37.4
Zm00001d004713_P001	Maize	endoplasmic reticulum	28.27	35.08
Zm00001d050827_P003	Maize	endoplasmic reticulum	22.78	28.88
Zm00001d024444_P001	Maize	plastid	31.65	25.95

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	EntrezGene:100283790	Gene3D:3.30.70.141	MapMan:6.3.2.4
UniProt:A0A1D6IW63	ProteinID:AQK40186.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004550
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006165	GO:GO:0006183	GO:GO:0006228
GO:GO:0006241	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	InterPro:IPR036850	HAMAP:MF_00451	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf
InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334	PRINTS:PR01243	ScanProsite:PS00469	PANTHER:PTHR11349
PANTHER:PTHR11349:SF44	SMART:SM00562	SUPFAM:SSF54919	UniParc:UPI00084497E6	EnsemblPlantsGene:Zm00001d023833	EnsemblPlants:Zm00001d023833_P001
EnsemblPlants:Zm00001d023833_T001	SEG:seg	:	:	:	:

Description

Nucleoside diphosphate kinase

Coordinates

chr10:-:23764459..23769871

Molecular Weight (calculated)

25576.1 Da

IEP (calculated)

9.586

GRAVY (calculated)

-0.088

Length

237 amino acids

Sequence
(BLAST)

001: METMSALART APPLAGTIRR PSCALRPTAS LSFAAASTTP RGRLGLGLST APAGSGRAAR ARAVPRRIVA SSVGLPCIFG LTSFNLLEVE QSYIMIKPDG
101: VQRGLVGEII SRFEKKGFLL KGLKLFQCPK DLAQEHYKDL KDKPFFPKLI DYITSGPVVC MAWEGDGVVA SARKLIGATN PLQAEPGTIR GDLAVQTGRN
201: VVHGSDSPDN GKREIELWFK EGEVCQWESV QAPWLIE

Best Arabidopsis Sequence Match ( AT5G63310.1 )
(BLAST)

001: MVGATVVSKW TPLCVASPPE RNSASLNPHC SPARVNFRTA LAAFRPQFRL FSRNSASRRR LRASSSAESG IFLPHLVASM EDVEETYIMV KPDGIQRGLV
101: GEIISRFEKK GFKLIGLKMF QCPKELAEEH YKDLSAKSFF PNLIEYITSG PVVCMAWEGV GVVASARKLI GKTDPLQAEP GTIRGDLAVQ TGRNIVHGSD
201: SPENGKREIG LWFKEGELCK WDSALATWLR E

Arabidopsis Description

NDPK2Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:Q0WUG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.