Factsheet for GSMUA_AchrUn_randomP14310_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P19320_001
GSMUA_Achr3P18200_001
GSMUA_Achr4P27190_001
GSMUA_Achr5P06640_001
GSMUA_Achr6P32570_001
GSMUA_Achr6P33100_001
GSMUA_Achr6P34400_001
GSMUA_Achr7P15340_001
GSMUA_Achr8P01770_001
GSMUA_Achr9P04280_001
GSMUA_Achr9P04780_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63310.1	GSMUA_Achr3P18200_001	AT2G04630.1	21798944
AT5G63310.1	GSMUA_Achr4P27190_001	AT2G04630.1	21798944
AT5G63310.1	GSMUA_Achr10P...	AT2G43790.1	12506203
AT5G63310.1	GSMUA_Achr2P19320_001	AT2G43790.1	12506203
AT5G63310.1	GSMUA_Achr5P06640_001	AT2G43790.1	12506203
AT5G63310.1	GSMUA_Achr6P33100_001	AT3G45640.1	12506203
AT5G63310.1	GSMUA_Achr9P04280_001	AT3G45640.1	12506203
AT5G63310.1	GSMUA_Achr10P...	AT3G55150.1	21798944
AT5G63310.1	GSMUA_Achr10P...	AT3G55150.1	21798944
AT5G63310.1	GSMUA_Achr6P34400_001	AT3G55150.1	21798944
AT5G63310.1	GSMUA_Achr7P15340_001	AT3G55150.1	21798944
AT5G63310.1	GSMUA_AchrUn_...	AT3G55150.1	21798944
AT5G63310.1	GSMUA_Achr6P32570_001	AT5G01820.1	17785451
AT5G63310.1	GSMUA_Achr8P01770_001	AT5G01820.1	17785451
AT5G63310.1	GSMUA_Achr9P04780_001	AT5G01820.1	17785451
AT5G63310.1	GSMUA_Achr10P...	AT5G35410.1	17785451
AT5G63310.1	GSMUA_AchrUn_...	AT5G63310.1	17785451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039453	Potato	cytosol	52.99	76.07
VIT_17s0000g10280.t01	Wine grape	plastid	72.65	73.91
KRH57193	Soybean	plastid	68.38	71.11
KRH03909	Soybean	plastid	68.38	70.48
Solyc03g110960.2.1	Tomato	plastid	68.38	68.67
PGSC0003DMT400069352	Potato	mitochondrion	64.96	67.86
Solyc06g071960.2.1	Tomato	plastid	64.53	67.41
Os12t0548300-01	Rice	plastid	63.25	67.27
KRH16591	Soybean	mitochondrion	55.98	67.18
EES16135	Sorghum	plastid	63.68	67.12
TraesCS5D01G104600.2	Wheat	plastid	62.39	66.36
TraesCS5B01G098300.2	Wheat	cytosol	48.72	66.28
AT5G63310.1	Thale cress	plastid	65.38	66.23
TraesCS5A01G092400.1	Wheat	plastid	62.39	66.06
Bra038621.1-P	Field mustard	plastid	63.68	64.22
CDY48138	Canola	plastid	62.82	63.91
CDY41513	Canola	plastid	63.25	63.79
CDX84395	Canola	plastid	63.25	63.79
Zm00001d023833_P001	Maize	plastid	63.25	62.45
GSMUA_Achr11P...	Banana	cytosol	37.61	61.97
GSMUA_Achr8P15010_001	Banana	cytosol	38.89	61.49
GSMUA_Achr5P18300_001	Banana	cytosol, unclear	38.46	60.81
HORVU5Hr1G024250.1	Barley	mitochondrion	63.25	59.68
KRG89746	Soybean	plastid	56.84	59.38
GSMUA_Achr1P11560_001	Banana	mitochondrion	39.74	39.24
GSMUA_Achr4P01100_001	Banana	mitochondrion	38.46	37.82
GSMUA_Achr3P05930_001	Banana	endoplasmic reticulum	24.36	32.95

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:6.3.2.4	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004550	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006165
GO:GO:0006183	GO:GO:0006228	GO:GO:0006241	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628	GO:GO:0009719	GO:GO:0009734
GO:GO:0009941	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0042542
EnsemblPlantsGene:GSMUA_AchrUn_randomG14310_001	EnsemblPlants:GSMUA_AchrUn_randomP14310_001	EnsemblPlants:GSMUA_AchrUn_randomT14310_001	InterPro:IPR036850	UniProt:M0U940	HAMAP:MF_00451
InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334	PRINTS:PR01243
ScanProsite:PS00469	PANTHER:PTHR11349	PANTHER:PTHR11349:SF44	SMART:SM00562	SUPFAM:SSF54919	UniParc:UPI000295927F
SEG:seg	:	:	:	:	:

Description

Nucleoside diphosphate kinase 2, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG14310_001]

Coordinates

chrchrUn_random:-:67727495..67735778

Molecular Weight (calculated)

25745.2 Da

IEP (calculated)

9.038

GRAVY (calculated)

-0.165

Length

234 amino acids

Sequence
(BLAST)

001: MDAVGVLAIC PCVLSETPLS RGKNGAAAAH GRAHSLSFRS YRHLAAFQPS PFLALSSSCR HAGTVRARRT KTRIFLPHLV AAMEGVEETY IMIKPDGVQR
101: GLVGEIISRF EKKGFLLKGL KLFQCPKELA EEHYKDLKDK SFYPKLIDYI TSGPVVCMAW EGVGVVASSR KLIGATNPLQ AEPGTIRGDL AVQTGRNVVH
201: GSDSPENGHR EIDLWFKEGE LCHWVPAQAP WLRE

Best Arabidopsis Sequence Match ( AT5G63310.1 )
(BLAST)

001: MVGATVVSKW TPLCVASPPE RNSASLNPHC SPARVNFRTA LAAFRPQFRL FSRNSASRRR LRASSSAESG IFLPHLVASM EDVEETYIMV KPDGIQRGLV
101: GEIISRFEKK GFKLIGLKMF QCPKELAEEH YKDLSAKSFF PNLIEYITSG PVVCMAWEGV GVVASARKLI GKTDPLQAEP GTIRGDLAVQ TGRNIVHGSD
201: SPENGKREIG LWFKEGELCK WDSALATWLR E

Arabidopsis Description

NDPK2Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:Q0WUG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.