CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70521
CDX73400
CDX76117
CDX78539
CDX79801
CDX83459
CDX84395
CDX86029
CDX99153
CDY02916
CDY04828
CDY17911
CDY30291
CDY30836
CDY36813
CDY40204
CDY41513
CDY44256
CDY44603
CDY48138
CDY67732
CDY70634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63310.1	CDY30291	AT2G04630.1	21798944
AT5G63310.1	CDY30836	AT2G04630.1	21798944
AT5G63310.1	CDX79801	AT2G43790.1	12506203
AT5G63310.1	CDX83459	AT2G43790.1	12506203
AT5G63310.1	CDY17911	AT2G43790.1	12506203
AT5G63310.1	CDY44256	AT2G43790.1	12506203
AT5G63310.1	CDX86029	AT3G45640.1	12506203
AT5G63310.1	CDX99153	AT3G45640.1	12506203
AT5G63310.1	CDX73400	AT3G55150.1	21798944
AT5G63310.1	CDX76117	AT3G55150.1	21798944
AT5G63310.1	CDY02916	AT3G55150.1	21798944
AT5G63310.1	CDY40204	AT3G55150.1	21798944
AT5G63310.1	CDY04828	AT5G01820.1	17785451
AT5G63310.1	CDX70521	AT5G13810.1	21798944
AT5G63310.1	CDX78539	AT5G13810.1	21798944
AT5G63310.1	CDY67732	AT5G13810.1	21798944
AT5G63310.1	CDY70634	AT5G13810.1	21798944
AT5G63310.1	CDY36813	AT5G35410.1	17785451
AT5G63310.1	CDY44603	AT5G35410.1	17785451
AT5G63310.1	CDX84395	AT5G63310.1	17785451
AT5G63310.1	CDY41513	AT5G63310.1	17785451
AT5G63310.1	CDY48138	AT5G63310.1	17785451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41513	Canola	plastid	95.69	95.69
CDY48138	Canola	plastid	86.64	87.39
AT5G63310.1	Thale cress	plastid	85.34	85.71
PGSC0003DMT400039453	Potato	cytosol	50.86	72.39
Solyc06g071960.2.1	Tomato	plastid	65.52	67.86
VIT_17s0000g10280.t01	Wine grape	plastid	66.81	67.39
PGSC0003DMT400069352	Potato	mitochondrion	64.66	66.96
KRH57193	Soybean	plastid	64.66	66.67
KRH03909	Soybean	plastid	64.66	66.08
Solyc03g110960.2.1	Tomato	plastid	64.66	64.38
KRH16591	Soybean	mitochondrion	53.88	64.1
GSMUA_AchrUn_...	Banana	plastid	63.79	63.25
TraesCS5B01G098300.2	Wheat	cytosol	46.12	62.21
CDX93161	Canola	cytosol	16.81	61.9
Os12t0548300-01	Rice	plastid	58.19	61.36
TraesCS5D01G104600.2	Wheat	plastid	57.33	60.45
TraesCS5A01G092400.1	Wheat	plastid	56.9	59.73
CDY13081	Canola	cytosol	37.93	59.46
CDY71669	Canola	cytosol, plasma membrane	37.93	59.46
EES16135	Sorghum	plastid	56.9	59.46
CDY42375	Canola	cytosol	37.07	58.11
KRG89746	Soybean	plastid	55.6	57.59
CDY10545	Canola	cytosol	36.64	57.43
CDY61716	Canola	cytosol	34.05	56.43
Zm00001d023833_P001	Maize	plastid	56.03	54.85
HORVU5Hr1G024250.1	Barley	mitochondrion	56.9	53.23
CDY25267	Canola	plastid	40.52	40.0
CDX94238	Canola	plastid	40.52	40.0
CDX86826	Canola	mitochondrion	40.09	39.41
CDY47613	Canola	mitochondrion	39.66	38.82
CDY03508	Canola	mitochondrion, plastid	39.22	38.4
CDX96770	Canola	endoplasmic reticulum	25.86	33.9
CDY66964	Canola	endoplasmic reticulum	25.43	33.52
CDY40857	Canola	endoplasmic reticulum, golgi	21.55	14.93

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:6.3.2.4	GO:A0A078D5I6
EnsemblPlants:CDX84395	ProteinID:CDX84395	ProteinID:CDX84395.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004550
GO:GO:0006139	GO:GO:0006165	GO:GO:0006183	GO:GO:0006228	GO:GO:0006241	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00141567001
InterPro:IPR036850	HAMAP:MF_00451	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS
PFAM:PF00334	PRINTS:PR01243	ScanProsite:PS00469	PANTHER:PTHR11349	PANTHER:PTHR11349:SF44	MetaCyc:PWY-6545
MetaCyc:PWY-7176	MetaCyc:PWY-7184	MetaCyc:PWY-7187	MetaCyc:PWY-7197	MetaCyc:PWY-7198	MetaCyc:PWY-7205
MetaCyc:PWY-7210	MetaCyc:PWY-7220	MetaCyc:PWY-7221	MetaCyc:PWY-7222	MetaCyc:PWY-7224	MetaCyc:PWY-7226
MetaCyc:PWY-7227	SMART:SM00562	SUPFAM:SSF54919	UniParc:UPI0001CAC0BB	:	:

Description

BnaC03g51050D

Coordinates

chrLK031837:-:758146..759948

Molecular Weight (calculated)

25595.1 Da

IEP (calculated)

9.124

GRAVY (calculated)

-0.125

Length

232 amino acids

Sequence
(BLAST)

001: MVGMAVVGQW TLCVASPSPR VKSATCNSNS CPTTVNLRSE LSAFRPQFRL FSRVSPTRRR RLCASSSADS GIFLPHLVAS MEQVEETYIM VKPDGIQRGL
101: VGEIISRFEK KGFKLIGLKM FQCPKELAQE HYKDLSAKSF FPSLIEYITS GPVVCMAWEG VGVVASVRKL IGKTDPLQAE PGTIRGDLAV QTGRNIVHGS
201: DSPENGKREI ALWFKEGELC GWDSALAKWL RE

Best Arabidopsis Sequence Match ( AT5G63310.1 )
(BLAST)

001: MVGATVVSKW TPLCVASPPE RNSASLNPHC SPARVNFRTA LAAFRPQFRL FSRNSASRRR LRASSSAESG IFLPHLVASM EDVEETYIMV KPDGIQRGLV
101: GEIISRFEKK GFKLIGLKMF QCPKELAEEH YKDLSAKSFF PNLIEYITSG PVVCMAWEGV GVVASARKLI GKTDPLQAEP GTIRGDLAVQ TGRNIVHGSD
201: SPENGKREIG LWFKEGELCK WDSALATWLR E

Arabidopsis Description

NDPK2Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:Q0WUG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.