Factsheet for VIT_17s0000g10280.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0317g00140.t01
VIT_05s0094g00900.t01
VIT_06s0004g03540.t01
VIT_08s0058g01090.t01
VIT_11s0016g05420.t01
VIT_12s0028g01210.t01
VIT_13s0019g00340.t01
VIT_16s0100g00530.t01
VIT_17s0000g10280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63310.1	VIT_12s0028g01210.t01	AT2G04630.1	21798944
AT5G63310.1	VIT_16s0100g00530.t01	AT2G04630.1	21798944
AT5G63310.1	VIT_05s0094g00900.t01	AT2G43790.1	12506203
AT5G63310.1	VIT_06s0004g03540.t01	AT3G45640.1	12506203
AT5G63310.1	VIT_00s0317g00140.t01	AT3G55150.1	21798944
AT5G63310.1	VIT_08s0058g01090.t01	AT5G01820.1	17785451
AT5G63310.1	VIT_13s0019g00340.t01	AT5G13810.1	21798944
AT5G63310.1	VIT_11s0016g05420.t01	AT5G35410.1	17785451
AT5G63310.1	VIT_17s0000g10280.t01	AT5G63310.1	17785451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57193	Soybean	plastid	76.09	77.78
PGSC0003DMT400039453	Potato	cytosol	53.91	76.07
KRH03909	Soybean	plastid	73.91	74.89
KRH16591	Soybean	mitochondrion	62.17	73.33
GSMUA_AchrUn_...	Banana	plastid	73.91	72.65
PGSC0003DMT400069352	Potato	mitochondrion	69.57	71.43
Solyc06g071960.2.1	Tomato	plastid	68.7	70.54
Solyc03g110960.2.1	Tomato	plastid	71.3	70.39
AT5G63310.1	Thale cress	plastid	69.13	68.83
CDY41513	Canola	plastid	69.13	68.53
Bra038621.1-P	Field mustard	plastid	68.26	67.67
CDY48138	Canola	plastid	67.39	67.39
Os12t0548300-01	Rice	plastid	63.91	66.82
CDX84395	Canola	plastid	67.39	66.81
EES16135	Sorghum	plastid	63.91	66.22
TraesCS5D01G104600.2	Wheat	plastid	63.04	65.91
TraesCS5B01G098300.2	Wheat	cytosol	49.13	65.7
TraesCS5A01G092400.1	Wheat	plastid	63.04	65.61
KRG89746	Soybean	plastid	63.48	65.18
Zm00001d023833_P001	Maize	plastid	63.04	61.18
HORVU5Hr1G024250.1	Barley	mitochondrion	64.35	59.68
VIT_15s0021g01330.t01	Wine grape	cytosol, extracellular	38.26	59.46
VIT_02s0025g01500.t01	Wine grape	plastid	39.13	38.3
VIT_09s0002g00950.t01	Wine grape	cytosol	23.04	37.06
VIT_19s0085g00080.t01	Wine grape	cytosol, mitochondrion	16.09	35.24

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	EntrezGene:100242823	wikigene:100242823	Gene3D:3.30.70.141
MapMan:6.3.2.4	ProteinID:CBI14861	ProteinID:CBI14861.3	UniProt:D7SHA2	EMBL:FN594950	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004550	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006165
GO:GO:0006183	GO:GO:0006228	GO:GO:0006241	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628	GO:GO:0009719	GO:GO:0009734
GO:GO:0009941	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0042542
InterPro:IPR036850	EntrezGene:LOC100242823	wikigene:LOC100242823	HAMAP:MF_00451	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf
InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334	PRINTS:PR01243	ScanProsite:PS00469	PANTHER:PTHR11349
PANTHER:PTHR11349:SF44	SMART:SM00562	SUPFAM:SSF54919	TIGR:TC53613	UniParc:UPI00015CDABB	ArrayExpress:VIT_17s0000g10280
EnsemblPlantsGene:VIT_17s0000g10280	EnsemblPlants:VIT_17s0000g10280.t01	unigene:Vvi.1122	RefSeq:XP_002263177	RefSeq:XP_002263177.1	SEG:seg

Description

Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:D7SHA2]

Coordinates

chr17:-:12530668..12532972

Molecular Weight (calculated)

25761.0 Da

IEP (calculated)

9.608

GRAVY (calculated)

-0.340

Length

230 amino acids

Sequence
(BLAST)

001: MEAAAVLGAR PSVSSSYLHS QTQRHCSLYV VSQKPTLRSD HRRLAAFHSP SNLFSYSPFR PHARSTKPRI FLPHLVASME QVEETYIMVK PDGVQRGLVG
101: EIISRFEKKG FKLTGLKLFQ CPKQLAEEHY KDLKEKSFFP KLIEYITSGP VVCMAWEGVG VVASARKLIG STNPLQAEPG TIRGDLAVQT GRNVVHGSDS
201: PENGKREISL WFKEGELCEW APVQAPWLRE

Best Arabidopsis Sequence Match ( AT5G63310.1 )
(BLAST)

001: MVGATVVSKW TPLCVASPPE RNSASLNPHC SPARVNFRTA LAAFRPQFRL FSRNSASRRR LRASSSAESG IFLPHLVASM EDVEETYIMV KPDGIQRGLV
101: GEIISRFEKK GFKLIGLKMF QCPKELAEEH YKDLSAKSFF PNLIEYITSG PVVCMAWEGV GVVASARKLI GKTDPLQAEP GTIRGDLAVQ TGRNIVHGSD
201: SPENGKREIG LWFKEGELCK WDSALATWLR E

Arabidopsis Description

NDPK2Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:Q0WUG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.