Factsheet for TraesCS5A01G092400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 22160430
golgi: 23128297

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2B01G194500.1
TraesCS2D01G175800.1
TraesCS4A01G106400.1
TraesCS4B01G197800.1
TraesCS4D01G198600.1
TraesCS5A01G092400.1
TraesCS5B01G098300.2
TraesCS5D01G104600.2
TraesCS7A01G111300.1
TraesCS7A01G377600.1
TraesCS7B01G009200.1
TraesCS7B01G279300.1
TraesCS7D01G106400.1
TraesCS7D01G374400.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63310.1	TraesCS2B01G194500.1	AT2G04630.1	21798944
AT5G63310.1	TraesCS2D01G175800.1	AT2G04630.1	21798944
AT5G63310.1	TraesCS7A01G111300.1	AT2G43790.1	12506203
AT5G63310.1	TraesCS7B01G009200.1	AT2G43790.1	12506203
AT5G63310.1	TraesCS7D01G106400.1	AT2G43790.1	12506203
AT5G63310.1	TraesCS4A01G106400.1	AT3G45640.1	12506203
AT5G63310.1	TraesCS4B01G197800.1	AT3G45640.1	12506203
AT5G63310.1	TraesCS4D01G198600.1	AT3G45640.1	12506203
AT5G63310.1	TraesCS7A01G377600.1	AT5G35410.1	17785451
AT5G63310.1	TraesCS7B01G279300.1	AT5G35410.1	17785451
AT5G63310.1	TraesCS7D01G374400.2	AT5G35410.1	17785451
AT5G63310.1	TraesCS5A01G092400.1	AT5G63310.1	17785451
AT5G63310.1	TraesCS5B01G098300.2	AT5G63310.1	17785451
AT5G63310.1	TraesCS5D01G104600.2	AT5G63310.1	17785451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G104600.2	Wheat	plastid	97.74	98.18
HORVU5Hr1G024250.1	Barley	mitochondrion	96.83	86.29
EES16135	Sorghum	plastid	83.26	82.88
Os12t0548300-01	Rice	plastid	79.64	80.0
Zm00001d023833_P001	Maize	plastid	81.9	76.37
TraesCS5B01G098300.2	Wheat	cytosol	56.56	72.67
PGSC0003DMT400039453	Potato	cytosol	53.39	72.39
TraesCS1A01G217200.1	Wheat	golgi	44.34	65.33
PGSC0003DMT400069352	Potato	mitochondrion	65.61	64.73
Solyc06g071960.2.1	Tomato	plastid	65.16	64.29
VIT_17s0000g10280.t01	Wine grape	plastid	65.61	63.04
GSMUA_AchrUn_...	Banana	plastid	66.06	62.39
Solyc03g110960.2.1	Tomato	plastid	64.71	61.37
KRH57193	Soybean	plastid	62.44	61.33
KRH03909	Soybean	plastid	61.99	60.35
AT5G63310.1	Thale cress	plastid	60.63	58.01
KRH16591	Soybean	mitochondrion	51.13	57.95
CDX84395	Canola	plastid	59.73	56.9
Bra038621.1-P	Field mustard	plastid	59.28	56.47
CDY41513	Canola	plastid	59.28	56.47
CDY48138	Canola	plastid	56.11	53.91
KRG89746	Soybean	plastid	52.49	51.79
TraesCS4A01G213400.2	Wheat	unclear	42.53	48.7
TraesCS1A01G444300.1	Wheat	mitochondrion, plastid	41.63	38.17
TraesCS7A01G380500.1	Wheat	endoplasmic reticulum	23.98	29.44

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:6.3.2.4	GO:GO:0003674
GO:GO:0003824	GO:GO:0004550	GO:GO:0006139	GO:GO:0006165	GO:GO:0006183	GO:GO:0006228
GO:GO:0006241	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	InterPro:IPR036850	HAMAP:MF_00451	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase
InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334	PRINTS:PR01243	ScanProsite:PS00469	PANTHER:PTHR11349	PANTHER:PTHR11349:SF44
SMART:SM00562	SUPFAM:SSF54919	EnsemblPlantsGene:TraesCS5A01G092400	EnsemblPlants:TraesCS5A01G092400.1	TIGR:cd04413	SEG:seg

Description

No Description!

Coordinates

chr5A:-:127610747..127615433

Molecular Weight (calculated)

23971.6 Da

IEP (calculated)

9.840

GRAVY (calculated)

-0.271

Length

221 amino acids

Sequence
(BLAST)

001: MDAMAALART GPSLAAAGHR SSATFRPSAS LSSFASASSR NRGRVGLSTA GCNRWATRVA RATPNRIVAS SEVEQTYIMI KPDGVQRGLV GEIISRFEKK
101: GFLLKGLKLF QCPKDLAQEH YKDLKERPFF PNLIDYITSG PVVCMAWEGD GVVASARKLI GATNPLQAEP GTIRGDLAVQ TGRNVVHGSD SPDNGKREIG
201: LWFKEGELAQ WESVQTPWLI E

Best Arabidopsis Sequence Match ( AT5G63310.1 )
(BLAST)

001: MVGATVVSKW TPLCVASPPE RNSASLNPHC SPARVNFRTA LAAFRPQFRL FSRNSASRRR LRASSSAESG IFLPHLVASM EDVEETYIMV KPDGIQRGLV
101: GEIISRFEKK GFKLIGLKMF QCPKELAEEH YKDLSAKSFF PNLIEYITSG PVVCMAWEGV GVVASARKLI GKTDPLQAEP GTIRGDLAVQ TGRNIVHGSD
201: SPENGKREIG LWFKEGELCK WDSALATWLR E

Arabidopsis Description

NDPK2Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:Q0WUG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.