Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_16s0098g00600.t01 | |
| VIT_17s0000g06020.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G04630.1 | VIT_17s0000g06020.t01 | AT3G47620.1 | 21798944 |
| AT2G04630.1 | VIT_16s0098g00600.t01 | AT3G49580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_16s0100g00530.t01 | Wine grape | nucleus | 90.78 | 90.14 |
| GSMUA_Achr3P18200_001 | Banana | nucleus | 88.65 | 87.41 |
| GSMUA_Achr4P27190_001 | Banana | nucleus | 87.23 | 86.62 |
| KRG91449 | Soybean | nucleus | 86.52 | 85.92 |
| Zm00001d033099_P001 | Maize | nucleus | 85.11 | 84.51 |
| Zm00001d013780_P001 | Maize | nucleus | 85.11 | 84.51 |
| Os03t0586600-01 | Rice | nucleus | 85.11 | 84.51 |
| EER96335 | Sorghum | nucleus | 83.69 | 82.52 |
| TraesCS2D01G175800.1 | Wheat | nucleus | 82.98 | 82.39 |
| TraesCS2B01G194500.1 | Wheat | nucleus | 82.98 | 82.39 |
| HORVU2Hr1G030940.1 | Barley | nucleus | 82.27 | 81.69 |
| AT2G04630.1 | Thale cress | nucleus | 82.98 | 81.25 |
| Os07t0463100-01 | Rice | nucleus | 81.56 | 80.99 |
| PGSC0003DMT400023048 | Potato | nucleus | 82.27 | 80.56 |
| Solyc09g010500.2.1 | Tomato | nucleus | 82.27 | 80.56 |
| CDY30291 | Canola | nucleus | 82.27 | 80.56 |
| Bra025617.1-P | Field mustard | nucleus | 82.27 | 80.56 |
| CDY30836 | Canola | nucleus | 82.27 | 80.56 |
| AT5G51940.1 | Thale cress | nucleus | 80.85 | 79.17 |
| KRH35367 | Soybean | nucleus | 81.56 | 78.77 |
| CDY00134 | Canola | nucleus | 80.14 | 78.47 |
| Bra039057.1-P | Field mustard | nucleus | 80.14 | 78.47 |
| CDY20025 | Canola | nucleus | 80.14 | 78.47 |
| KXG38092 | Sorghum | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 78.01 | 74.83 |
| Os08t0426000-00 | Rice | nucleus | 37.59 | 17.21 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | EntrezGene:100243758 | wikigene:100243758 | MapMan:15.1.6.4 | Gene3D:3.90.940.10 |
| ProteinID:CBI22057 | ProteinID:CBI22057.3 | InterPro:DNA-dir_RNA_polK_14-18kDa_CS | UniProt:E0CTZ1 | EMBL:FN595235 | GO:GO:0001054 |
| GO:GO:0001055 | GO:GO:0001056 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005665 | GO:GO:0005666 | GO:GO:0005730 | GO:GO:0005736 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006360 | GO:GO:0006366 | GO:GO:0006383 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR012293 | EntrezGene:LOC100243758 | wikigene:LOC100243758 |
| HAMAP:MF_00192 | PFAM:PF01192 | PIRSF:PIRSF000778 | PIRSF:PIRSF500154 | ScanProsite:PS01111 | PANTHER:PTHR10773 |
| PANTHER:PTHR10773:SF14 | InterPro:Pol_omega/K/RPB6 | InterPro:RNAP_RPB6_omega | InterPro:RPB6 | InterPro:RPB6/omega_like_sf | InterPro:RpoK/Rpb6 |
| SMART:SM01409 | SUPFAM:SSF63562 | UniParc:UPI00015C9D61 | ArrayExpress:VIT_12s0028g01210 | EnsemblPlantsGene:VIT_12s0028g01210 | EnsemblPlants:VIT_12s0028g01210.t01 |
| RefSeq:XP_002282723 | RefSeq:XP_002282723.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr12:+:1834942..1839534
Molecular Weight (calculated)
16291.7 Da
IEP (calculated)
3.920
GRAVY (calculated)
-1.042
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MADDDYNDMD MGYEDEPPEP EIEEGAEEDA DNNNNEDIPD AIETAEKEQV PVERSRKTSK YMTKYERARI LGTRALQISM NAPVMVELEG ETDPLEIAMK
101: ELRERKIPFT IRRYLPDGSY EDWGVDELIV EDSWKRQVGG D
101: ELRERKIPFT IRRYLPDGSY EDWGVDELIV EDSWKRQVGG D
001: MADDDYNEVD DLGYEDEPAE PEIEEGVEED ADIKENDDVN VDPLETEDKV ETEPVQRPRK TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI
101: AMKELRQRKI PFTIRRYLPD MSYEEWGVDE LIVEDSWKRQ VGGD
101: AMKELRQRKI PFTIRRYLPD MSYEEWGVDE LIVEDSWKRQ VGGD
Arabidopsis Description
NRPB6BDNA-directed RNA polymerases II and V subunit 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.