Factsheet for GSMUA_Achr5P18300_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	89.86	93.66
GSMUA_Achr8P15010_001	Banana	cytosol	89.19	89.19
Solyc01g089970.2.1	Tomato	extracellular, plastid	84.46	84.46
EER91919	Sorghum	cytosol	84.46	83.89
PGSC0003DMT400080042	Potato	cytosol	83.78	83.78
Zm00001d029968_P001	Maize	plastid	83.78	83.22
KRH66485	Soybean	endoplasmic reticulum	83.11	82.55
KRH48835	Soybean	endoplasmic reticulum, nucleus	83.11	82.55
VIT_15s0021g01330.t01	Wine grape	cytosol, extracellular	81.76	81.76
CDY13081	Canola	cytosol	81.08	81.08
CDY71669	Canola	cytosol, plasma membrane	81.08	81.08
Bra027579.1-P	Field mustard	cytosol	81.08	81.08
TraesCS1B01G230300.1	Wheat	cytosol, plastid	81.76	80.67
TraesCS1D01G219000.1	Wheat	plastid	81.76	80.13
EER99399	Sorghum	cytosol	81.08	80.0
TraesCS1A01G217200.1	Wheat	golgi	81.08	80.0
AT4G09320.1	Thale cress	cytosol, mitochondrion, nucleus	80.41	79.87
CDY42375	Canola	cytosol	79.73	79.73
Bra030844.1-P	Field mustard	cytosol	79.73	79.73
HORVU1Hr1G055440.1	Barley	cytosol, plasma membrane	80.41	79.33
CDY10545	Canola	cytosol	79.05	79.05
Zm00001d021526_P001	Maize	cytosol, extracellular	81.08	78.43
Os07t0492000-01	Rice	extracellular	78.38	77.85
CDX93161	Canola	cytosol	33.11	77.78
Os10t0563700-01	Rice	extracellular	78.38	76.82
Solyc09g055420.1.1	Tomato	cytosol, unclear	58.78	74.36
CDY61716	Canola	cytosol	70.27	74.29
Bra013108.1-P	Field mustard	cytosol	40.54	71.43
TraesCS4B01G102400.2	Wheat	cytosol	77.7	59.59
TraesCS4A01G213400.2	Wheat	unclear	77.03	59.07
TraesCS4D01G099200.2	Wheat	cytosol	77.03	59.07
VIT_19s0085g00080.t01	Wine grape	cytosol, mitochondrion	35.81	50.48
KXG23408	Sorghum	plastid	25.0	46.84
GSMUA_AchrUn_...	Banana	plastid	60.81	38.46
GSMUA_Achr1P11560_001	Banana	mitochondrion	59.46	37.13
GSMUA_Achr4P01100_001	Banana	mitochondrion	59.46	36.97
GSMUA_Achr3P05930_001	Banana	endoplasmic reticulum	33.11	28.32

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:6.3.2.4	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004550	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006165	GO:GO:0006183	GO:GO:0006228	GO:GO:0006241	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr5G18300_001
EnsemblPlants:GSMUA_Achr5P18300_001	EnsemblPlants:GSMUA_Achr5T18300_001	InterPro:IPR036850	UniProt:M0SZK9	HAMAP:MF_00451	InterPro:NDK-like_dom
InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334	PRINTS:PR01243	ScanProsite:PS00469
PANTHER:PTHR11349	PANTHER:PTHR11349:SF66	SMART:SM00562	SUPFAM:SSF54919	UniParc:UPI000296A0A0	:

Description

Nucleoside diphosphate kinase 1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G18300_001]

Coordinates

chr5:+:19768602..19770247

Molecular Weight (calculated)

16294.7 Da

IEP (calculated)

6.808

GRAVY (calculated)

0.042

Length

148 amino acids

Sequence
(BLAST)

001: MEQTFIMIKP DGVQRGLVGE IISRFEKKGF YLKGLKMVSV ERSFAEKHYA DLSAKPFFAG LVEYIISGPV VAMVWAGKNI VVTGRKIIGA TNPADSAPGT
101: IRGDLAIEIG RNVIHGSDSI ESASKEIALW FPEGVAEWQS NLHPWIYE

Best Arabidopsis Sequence Match ( AT4G09320.1 )
(BLAST)

001: MEQTFIMIKP DGVQRGLIGE VICRFEKKGF TLKGLKLISV ERSFAEKHYE DLSSKSFFSG LVDYIVSGPV VAMIWEGKNV VLTGRKIIGA TNPAASEPGT
101: IRGDFAIDIG RNVIHGSDSV ESARKEIALW FPDGPVNWQS SVHPWVYET

Arabidopsis Description

NDK1Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UXQ6]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.