Factsheet for TraesCS1D01G219000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22160430
plastid: 28542341

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 28542341 doi

K Shi, J Gu, H Guo, L Zhao, Y Xie, H Xiong, J Li, S Zhao, X Song, L Liu

National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China., School of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G230300.1	Wheat	cytosol, plastid	98.68	99.33
TraesCS1A01G217200.1	Wheat	golgi	97.35	98.0
HORVU1Hr1G055440.1	Barley	cytosol, plasma membrane	96.03	96.67
Os10t0563700-01	Rice	extracellular	90.07	90.07
EER91919	Sorghum	cytosol	86.75	87.92
Zm00001d029968_P001	Maize	plastid	86.09	87.25
Solyc01g089970.2.1	Tomato	extracellular, plastid	83.44	85.14
KRH48835	Soybean	endoplasmic reticulum, nucleus	83.44	84.56
PGSC0003DMT400080042	Potato	cytosol	82.78	84.46
GSMUA_Achr11P...	Banana	cytosol	78.81	83.8
AT4G09320.1	Thale cress	cytosol, mitochondrion, nucleus	82.12	83.22
KRH66485	Soybean	endoplasmic reticulum	80.79	81.88
GSMUA_Achr5P18300_001	Banana	cytosol, unclear	80.13	81.76
GSMUA_Achr8P15010_001	Banana	cytosol	80.13	81.76
VIT_15s0021g01330.t01	Wine grape	cytosol, extracellular	79.47	81.08
CDY71669	Canola	cytosol, plasma membrane	77.48	79.05
CDY13081	Canola	cytosol	76.82	78.38
CDY10545	Canola	cytosol	76.82	78.38
Bra027579.1-P	Field mustard	cytosol	76.82	78.38
CDY42375	Canola	cytosol	76.16	77.7
Bra030844.1-P	Field mustard	cytosol	76.16	77.7
Solyc09g055420.1.1	Tomato	cytosol, unclear	58.28	75.21
CDY61716	Canola	cytosol	68.21	73.57
CDX93161	Canola	cytosol	29.14	69.84
Bra013108.1-P	Field mustard	cytosol	37.75	67.86
TraesCS4D01G099200.2	Wheat	cytosol	74.83	58.55
TraesCS1D01G452300.1	Wheat	cytosol	58.28	54.32
VIT_19s0085g00080.t01	Wine grape	cytosol, mitochondrion	34.44	49.52
TraesCS5D01G104600.2	Wheat	plastid	64.24	44.09
TraesCS7D01G376900.1	Wheat	endoplasmic reticulum	32.45	27.22

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:6.3.2.4	GO:GO:0003674
GO:GO:0003824	GO:GO:0004550	GO:GO:0006139	GO:GO:0006165	GO:GO:0006183	GO:GO:0006228
GO:GO:0006241	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	InterPro:IPR036850	HAMAP:MF_00451	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase
InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334	PRINTS:PR01243	ScanProsite:PS00469	PANTHER:PTHR11349	PANTHER:PTHR11349:SF66
SMART:SM00562	SUPFAM:SSF54919	EnsemblPlantsGene:TraesCS1D01G219000	EnsemblPlants:TraesCS1D01G219000.1	TIGR:cd04413	:

Description

No Description!

Coordinates

chr1D:+:306634613..306636706

Molecular Weight (calculated)

16705.0 Da

IEP (calculated)

6.810

GRAVY (calculated)

-0.131

Length

151 amino acids

Sequence
(BLAST)

001: MASEQTFIMI KPDGVQRGLI GEVISRFEKK GFYLKGLKLQ NVEKSFAEQH YADLSSKPFF AGLVEYIVSG PVVAMVWEGK SVVSTGRKII GATNPLASEP
101: GTIRGDFAVD IGRNVIHGSD SVESARKEIA LWFPEGIAEW RSSQHNWIYE A

Best Arabidopsis Sequence Match ( AT4G09320.1 )
(BLAST)

001: MEQTFIMIKP DGVQRGLIGE VICRFEKKGF TLKGLKLISV ERSFAEKHYE DLSSKSFFSG LVDYIVSGPV VAMIWEGKNV VLTGRKIIGA TNPAASEPGT
101: IRGDFAIDIG RNVIHGSDSV ESARKEIALW FPDGPVNWQS SVHPWVYET

Arabidopsis Description

NDK1Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UXQ6]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.