Factsheet for Os10t0563700-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

extracellular: 19038476
extracellular: 24083427
extracellular: 26072143
plasma membrane: 27800704
plastid: 27992503

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

msms PMID: 19038476 doi

XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G219000.1	Wheat	plastid	90.07	90.07
TraesCS1B01G230300.1	Wheat	cytosol, plastid	89.4	90.0
HORVU1Hr1G055440.1	Barley	cytosol, plasma membrane	89.4	90.0
TraesCS1A01G217200.1	Wheat	golgi	88.08	88.67
EER91919	Sorghum	cytosol	83.44	84.56
Zm00001d029968_P001	Maize	plastid	82.78	83.89
PGSC0003DMT400080042	Potato	cytosol	80.13	81.76
Solyc01g089970.2.1	Tomato	extracellular, plastid	79.47	81.08
AT4G09320.1	Thale cress	cytosol, mitochondrion, nucleus	79.47	80.54
GSMUA_Achr11P...	Banana	cytosol	75.5	80.28
KRH48835	Soybean	endoplasmic reticulum, nucleus	78.81	79.87
GSMUA_Achr5P18300_001	Banana	cytosol, unclear	76.82	78.38
GSMUA_Achr8P15010_001	Banana	cytosol	76.82	78.38
VIT_15s0021g01330.t01	Wine grape	cytosol, extracellular	76.16	77.7
KRH66485	Soybean	endoplasmic reticulum	76.16	77.18
Os07t0492000-01	Rice	extracellular	76.16	77.18
CDY71669	Canola	cytosol, plasma membrane	74.17	75.68
Bra027579.1-P	Field mustard	cytosol	73.51	75.0
CDY13081	Canola	cytosol	73.51	75.0
CDY10545	Canola	cytosol	73.51	75.0
CDY42375	Canola	cytosol	72.85	74.32
Bra030844.1-P	Field mustard	cytosol	72.85	74.32
Solyc09g055420.1.1	Tomato	cytosol, unclear	56.29	72.65
CDX93161	Canola	cytosol	29.8	71.43
CDY61716	Canola	cytosol	65.56	70.71
Bra013108.1-P	Field mustard	cytosol	38.41	69.05
VIT_19s0085g00080.t01	Wine grape	cytosol, mitochondrion	32.45	46.67
Os12t0548300-01	Rice	plastid	65.56	45.0
Os05t0595400-01	Rice	plastid	58.94	37.24
Os02t0565100-01	Rice	endoplasmic reticulum	31.79	26.52

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	EntrezGene:4349403	MapMan:6.3.2.4
ProteinID:AAG60181.1	ProteinID:AAP55038.1	EMBL:AK072751	ProteinID:BAF27241.1	ProteinID:BAT12086.1	ProteinID:EAZ16996.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004550	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006165	GO:GO:0006183
GO:GO:0006228	GO:GO:0006241	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	InterPro:IPR036850	HAMAP:MF_00451	InterPro:NDK-like_dom
InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS	EnsemblPlantsGene:Os10g0563700	EnsemblPlants:Os10t0563700-01	PFAM:PF00334
PRINTS:PR01243	ScanProsite:PS00469	PANTHER:PTHR11349	PANTHER:PTHR11349:SF66	UniProt:Q7XC37	SMART:SM00562
SUPFAM:SSF54919	UniParc:UPI00000A4874	RefSeq:XP_015614147.1	:	:	:

Description

Similar to Nucleoside diphosphate kinase I (EC 2.7.4.6) (NDK I) (NDP kinase I) (PP18). (Os10t0563700-01)

Coordinates

chr10:-:22258025..22260435

Molecular Weight (calculated)

16780.3 Da

IEP (calculated)

7.768

GRAVY (calculated)

-0.075

Length

151 amino acids

Sequence
(BLAST)

001: MALEQTFIMI KPDGVQRGLI GEVIGRFEKK GFYLKAMKLI NVEKSFAEKH YADLSSKPFF GGLVEYIVSG PVVAMVWEGK QVVSTGRKLV GATNPLAAEP
101: GTIRGDFAVD IGRNVIHGSD SVENARKEIA LWFPEGIAEW RSNQHPWIYE V

Best Arabidopsis Sequence Match ( AT4G09320.1 )
(BLAST)

001: MEQTFIMIKP DGVQRGLIGE VICRFEKKGF TLKGLKLISV ERSFAEKHYE DLSSKSFFSG LVDYIVSGPV VAMIWEGKNV VLTGRKIIGA TNPAASEPGT
101: IRGDFAIDIG RNVIHGSDSV ESARKEIALW FPDGPVNWQS SVHPWVYET

Arabidopsis Description

NDK1Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UXQ6]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.