Factsheet for Solyc09g055420.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g089970.2.1	Tomato	extracellular, plastid	83.76	66.22
PGSC0003DMT400080042	Potato	cytosol	83.76	66.22
EER91919	Sorghum	cytosol	75.21	59.06
GSMUA_Achr5P18300_001	Banana	cytosol, unclear	74.36	58.78
TraesCS1B01G230300.1	Wheat	cytosol, plastid	75.21	58.67
KRH48835	Soybean	endoplasmic reticulum, nucleus	74.36	58.39
TraesCS1D01G219000.1	Wheat	plastid	75.21	58.28
HORVU1Hr1G055440.1	Barley	cytosol, plasma membrane	74.36	58.0
GSMUA_Achr11P...	Banana	cytosol	70.09	57.75
Zm00001d029968_P001	Maize	plastid	73.5	57.72
GSMUA_Achr8P15010_001	Banana	cytosol	72.65	57.43
TraesCS1A01G217200.1	Wheat	golgi	73.5	57.33
AT4G09320.1	Thale cress	cytosol, mitochondrion, nucleus	72.65	57.05
VIT_15s0021g01330.t01	Wine grape	cytosol, extracellular	71.79	56.76
KRH66485	Soybean	endoplasmic reticulum	71.79	56.38
Os10t0563700-01	Rice	extracellular	72.65	56.29
CDY71669	Canola	cytosol, plasma membrane	70.94	56.08
CDY42375	Canola	cytosol	70.94	56.08
CDY10545	Canola	cytosol	70.94	56.08
Bra030844.1-P	Field mustard	cytosol	70.94	56.08
CDY13081	Canola	cytosol	70.09	55.41
Bra027579.1-P	Field mustard	cytosol	70.09	55.41
EER99399	Sorghum	cytosol	68.38	53.33
Os07t0492000-01	Rice	extracellular	67.52	53.02
Zm00001d021526_P001	Maize	cytosol, extracellular	68.38	52.29
CDY61716	Canola	cytosol	57.27	47.86
CDX93161	Canola	cytosol	24.79	46.03
Bra013108.1-P	Field mustard	cytosol	32.48	45.24
Solyc06g075470.1.1	Tomato	cytosol	29.91	44.3
TraesCS4A01G213400.2	Wheat	unclear	67.52	40.93
KXG23408	Sorghum	plastid	27.35	40.51
TraesCS4B01G102400.2	Wheat	cytosol	66.67	40.41
TraesCS4D01G099200.2	Wheat	cytosol	66.67	40.41
Solyc06g071960.2.1	Tomato	plastid	54.7	28.57
Solyc08g008340.2.1	Tomato	plastid	55.56	27.78
Solyc03g110960.2.1	Tomato	plastid	54.7	27.47
Solyc08g082430.2.1	Tomato	plastid	55.56	27.31
Solyc12g049370.1.1	Tomato	endoplasmic reticulum	34.19	23.26

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:50.2.7	GO:GO:0003674
GO:GO:0003824	GO:GO:0004550	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0006165	GO:GO:0006183	GO:GO:0006228	GO:GO:0006241	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	InterPro:IPR036850	UniProt:K4CT39
InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf	PFAM:PF00334	PANTHER:PTHR11349	PANTHER:PTHR11349:SF66	SMART:SM00562
SUPFAM:SSF54919	EnsemblPlantsGene:Solyc09g055420.1	EnsemblPlants:Solyc09g055420.1.1	UniParc:UPI000276AF4E	:	:

Description

No Description!

Coordinates

chr9:-:40918833..40919252

Molecular Weight (calculated)

12630.3 Da

IEP (calculated)

5.097

GRAVY (calculated)

0.181

Length

117 amino acids

Sequence
(BLAST)

001: MEQTFIMIKP DGVQRGLVDR AFAEKYDANL SSTPFFNGIV EYIVSGPVVA MVWEGKGVVS LGRKIIGATN PLESAAGAIC GYFAIYIGKN VIQGSDVGES
101: AKKEIALWFP KGLAEWQ

Best Arabidopsis Sequence Match ( AT4G09320.1 )
(BLAST)

001: MEQTFIMIKP DGVQRGLIGE VICRFEKKGF TLKGLKLISV ERSFAEKHYE DLSSKSFFSG LVDYIVSGPV VAMIWEGKNV VLTGRKIIGA TNPAASEPGT
101: IRGDFAIDIG RNVIHGSDSV ESARKEIALW FPDGPVNWQS SVHPWVYET

Arabidopsis Description

NDK1Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UXQ6]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.