Factsheet for Solyc08g082430.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 8
nucleus 1

Predictors

GFP

MS/MS

Papers

extracellular: 12376655
plastid: 20363867
plastid: 22908117
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 12376655 doi

M Rep, HL Dekker, JH Vossen, AD de Boer, PM Houterman, D Speijer, JW Back, CG de Koster, BJ Cornelissen

Plant Pathology, Swammerdam Institute for Life Sciences, University of Amsterdam, Nieuwe Achtergracht 166, 1018 WV Amsterdam, The Netherlands. rep@science.uva.nl

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031997	Potato	extracellular	98.74	98.74
Solyc06g075470.1.1	Tomato	cytosol	30.67	92.41
TraesCS1D01G452300.1	Wheat	cytosol	60.5	88.89
Solyc08g008340.2.1	Tomato	plastid	86.97	88.46
VIT_02s0025g01500.t01	Wine grape	plastid	81.09	82.13
AT4G11010.1	Thale cress	mitochondrion, plastid	80.25	80.25
Bra033163.1-P	Field mustard	plastid	78.57	79.57
CDY25267	Canola	plastid	78.57	79.57
CDX94238	Canola	plastid	78.15	79.15
AT4G23900.1	Thale cress	mitochondrion	78.57	78.9
Bra035260.1-P	Field mustard	mitochondrion	78.15	78.81
CDX86826	Canola	mitochondrion	78.15	78.81
KRH41307	Soybean	mitochondrion	78.15	78.81
KRH60038	Soybean	mitochondrion	77.73	78.72
CDY47613	Canola	mitochondrion	76.89	77.22
Bra013742.1-P	Field mustard	mitochondrion	76.47	76.79
CDY03508	Canola	mitochondrion, plastid	75.21	75.53
Os05t0595400-01	Rice	plastid	73.95	73.64
GSMUA_Achr4P01100_001	Banana	mitochondrion	72.69	72.69
GSMUA_Achr1P11560_001	Banana	mitochondrion	72.27	72.57
Zm00001d039221_P001	Maize	mitochondrion	70.59	70.89
Zm00001d009774_P001	Maize	mitochondrion	69.75	69.75
TraesCS1A01G444300.1	Wheat	mitochondrion, plastid	70.59	69.71
KXG22725	Sorghum	mitochondrion	71.01	69.55
TraesCS1B01G478800.1	Wheat	plastid	71.01	68.15
HORVU1Hr1G095400.2	Barley	plastid	71.01	68.15
Zm00001d004713_P001	Maize	endoplasmic reticulum	51.26	63.87
Solyc01g089970.2.1	Tomato	extracellular, plastid	36.13	58.11
Solyc09g055420.1.1	Tomato	cytosol, unclear	27.31	55.56
Zm00001d024444_P001	Maize	plastid	55.46	45.67
Solyc06g071960.2.1	Tomato	plastid	40.34	42.86
Solyc03g110960.2.1	Tomato	plastid	39.5	40.34
AT4G23895.3	Thale cress	cytosol	77.73	39.61
Solyc12g049370.1.1	Tomato	endoplasmic reticulum	22.69	31.4
CDY40857	Canola	endoplasmic reticulum, golgi	40.34	28.66

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:6.3.2.4	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004550	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006139
GO:GO:0006165	GO:GO:0006183	GO:GO:0006228	GO:GO:0006241	GO:GO:0006950	GO:GO:0006979
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009536	GO:GO:0009987
GO:GO:0016020	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0050897	InterPro:IPR036850
UniProt:K4CPN9	HAMAP:MF_00451	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS
PFAM:PF00334	PRINTS:PR01243	ScanProsite:PS00469	PANTHER:PTHR11349	PANTHER:PTHR11349:SF91	SMART:SM00562
SUPFAM:SSF54919	EnsemblPlantsGene:Solyc08g082430.2	EnsemblPlants:Solyc08g082430.2.1	UniParc:UPI000276C6BB	SEG:seg	:

Description

Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:K4CPN9]

Coordinates

chr8:+:65238261..65241246

Molecular Weight (calculated)

25817.8 Da

IEP (calculated)

9.589

GRAVY (calculated)

-0.224

Length

238 amino acids

Sequence
(BLAST)

001: MNSQICRSAT RAAKSLLSAS SKQTSRAFSG GRAAAAAATV SLRGVVPSLA SYGRNESGNA SRAWISGVLA LPAAAYMLQE QEAHAAEMER TFIAIKPDGV
101: QRGLISEIVS RFERKGFKLV AIKVVIPSKE FAKKHYHDLS ERPFFNGLCD FLSSGPVLAM VWEGEGVIRY GRKLIGATDP QKSEPGTIRG DLAVVVGRNI
201: IHGSDGPETA KDEINLWFKP EELVNYTSNS EKWLYGDN

Best Arabidopsis Sequence Match ( AT4G23900.1 )
(BLAST)

001: MSSQICRSAS RAARSLLSSA KNARFFSEGR AIGAASVVHA TGKVPQYASN FGKSGSGFVS NSWITGLLAL PAAAFMLQDQ EALAAEMERT FIAIKPDGVQ
101: RGLISEIITR FERKGYKLVG IKVMVPSKGF AQKHYHDLKE RPFFNGLCNF LSSGPVVAMV WEGEGVIRYG RKLIGATDPQ KSEPGTIRGD LAVVVGRNII
201: HGSDGPETAK DEISLWFKPE ELVSYTSNAE KWIYGQN

Arabidopsis Description

NDK4Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LAH8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.