Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G23900.1 | Thale cress | mitochondrion | 50.32 | 99.16 |
| Solyc06g075470.1.1 | Tomato | cytosol | 16.06 | 94.94 |
| CDY47613 | Canola | mitochondrion | 45.61 | 89.87 |
| Bra013742.1-P | Field mustard | mitochondrion | 45.4 | 89.45 |
| TraesCS1D01G452300.1 | Wheat | cytosol | 30.62 | 88.27 |
| CDY03508 | Canola | mitochondrion, plastid | 44.54 | 87.76 |
| AT4G11010.1 | Thale cress | mitochondrion, plastid | 44.33 | 86.97 |
| PGSC0003DMT400014828 | Potato | mitochondrion | 39.61 | 79.74 |
| KRH41307 | Soybean | mitochondrion | 40.26 | 79.66 |
| Solyc08g008340.2.1 | Tomato | plastid | 39.83 | 79.49 |
| KRH60038 | Soybean | mitochondrion | 39.61 | 78.72 |
| PGSC0003DMT400031997 | Potato | extracellular | 40.04 | 78.57 |
| Solyc08g082430.2.1 | Tomato | plastid | 39.61 | 77.73 |
| VIT_02s0025g01500.t01 | Wine grape | plastid | 38.97 | 77.45 |
| Zm00001d039221_P001 | Maize | mitochondrion | 35.55 | 70.04 |
| GSMUA_Achr4P01100_001 | Banana | mitochondrion | 35.55 | 69.75 |
| Zm00001d009774_P001 | Maize | mitochondrion | 35.33 | 69.33 |
| GSMUA_Achr1P11560_001 | Banana | mitochondrion | 35.12 | 69.2 |
| KXG22725 | Sorghum | mitochondrion | 35.76 | 68.72 |
| Os05t0595400-01 | Rice | plastid | 35.12 | 68.62 |
| TraesCS1A01G444300.1 | Wheat | mitochondrion, plastid | 34.9 | 67.63 |
| TraesCS1B01G478800.1 | Wheat | plastid | 35.33 | 66.53 |
| HORVU1Hr1G095400.2 | Barley | plastid | 35.12 | 66.13 |
| Zm00001d004713_P001 | Maize | endoplasmic reticulum | 25.91 | 63.35 |
| AT4G09320.1 | Thale cress | cytosol, mitochondrion, nucleus | 18.2 | 57.05 |
| Zm00001d024444_P001 | Maize | plastid | 27.84 | 44.98 |
| AT5G63310.1 | Thale cress | plastid | 20.56 | 41.56 |
| AT1G17410.1 | Thale cress | endoplasmic reticulum | 10.71 | 27.62 |
Protein Annotations
| KEGG:00230+2.7.4.6 | KEGG:00240+2.7.4.6 | KEGG:00983+2.7.4.6 | Gene3D:2.30.29.30 | EntrezGene:2745723 | Gene3D:3.30.70.141 |
| MapMan:6.3.2.4 | ProteinID:AEE84823.1 | ArrayExpress:AT4G23895 | EnsemblPlantsGene:AT4G23895 | RefSeq:AT4G23895 | TAIR:AT4G23895 |
| RefSeq:AT4G23895-TAIR-G | EnsemblPlants:AT4G23895.3 | TAIR:AT4G23895.3 | Unigene:At.32397 | ncoils:Coil | UniProt:F4JPD8 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004550 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 | GO:GO:0006165 | GO:GO:0006183 |
| GO:GO:0006228 | GO:GO:0006241 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016301 | GO:GO:0016310 | GO:GO:0016740 | InterPro:IPR001849 | InterPro:IPR011993 | InterPro:IPR036850 |
| HAMAP:MF_00451 | InterPro:NDK-like_dom | InterPro:NDK-like_dom_sf | RefSeq:NP_001190817.1 | InterPro:Nucleoside_diP_kinase | InterPro:Nucleoside_diP_kinase_AS |
| PFAM:PF00334 | InterPro:PH-like_dom_sf | InterPro:PH_domain | PO:PO:0000293 | PRINTS:PR01243 | ScanProsite:PS00469 |
| PFscan:PS50003 | PANTHER:PTHR34837 | PANTHER:PTHR34837:SF2 | SMART:SM00233 | SMART:SM00562 | SUPFAM:SSF50729 |
| SUPFAM:SSF54919 | UniParc:UPI0001E92F36 | SEG:seg | : | : | : |
Description
Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:F4JPD8]
Coordinates
chr4:+:12422087..12426475
Molecular Weight (calculated)
52002.5 Da
IEP (calculated)
6.142
GRAVY (calculated)
-0.358
Length
467 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDGTPKKLN ILPDHFSAPS PTAESSQHDT PSSSQPKDDS SLRPYSQSRT RRNLKRAATM LNLFTLRRLP WVSDGQEKVE LSAAELESLR SELSDMEERE
101: AYLKAQLEHV DEVLRSARLS GYLFIRSRWA ALPGEPPPID DTEVDDWLPR FVVLQGPCLF FYLLSTDLSP QDSTLLADIV EIGSVPSYTR EFDETHYCFY
201: ILTRQGLRFE CSSTSKTQVD SWLSVLRLDC KSEPEERSAS RAARSLLSSA KNARFFSEGR AIGAASVVHA TGKVPQYASN FGKSGSGFVS NSWITGLLAL
301: PAAAFMLQDQ EALAAEMERT FIAIKPDGVQ RGLISEIITR FERKGYKLVG IKVMVPSKGF AQKHYHDLKE RPFFNGLCNF LSSGPVVAMV WEGEGVIRYG
401: RKLIGATDPQ KSEPGTIRGD LAVVVGRNII HGSDGPETAK DEISLWFKPE ELVSYTSNAE KWIYGQN
101: AYLKAQLEHV DEVLRSARLS GYLFIRSRWA ALPGEPPPID DTEVDDWLPR FVVLQGPCLF FYLLSTDLSP QDSTLLADIV EIGSVPSYTR EFDETHYCFY
201: ILTRQGLRFE CSSTSKTQVD SWLSVLRLDC KSEPEERSAS RAARSLLSSA KNARFFSEGR AIGAASVVHA TGKVPQYASN FGKSGSGFVS NSWITGLLAL
301: PAAAFMLQDQ EALAAEMERT FIAIKPDGVQ RGLISEIITR FERKGYKLVG IKVMVPSKGF AQKHYHDLKE RPFFNGLCNF LSSGPVVAMV WEGEGVIRYG
401: RKLIGATDPQ KSEPGTIRGD LAVVVGRNII HGSDGPETAK DEISLWFKPE ELVSYTSNAE KWIYGQN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.