Factsheet for PGSC0003DMT400031997

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 5
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g082430.2.1	Tomato	plastid	98.74	98.74
PGSC0003DMT400014828	Potato	mitochondrion	88.24	90.52
TraesCS1D01G452300.1	Wheat	cytosol	60.5	88.89
VIT_02s0025g01500.t01	Wine grape	plastid	81.09	82.13
AT4G11010.1	Thale cress	mitochondrion, plastid	81.09	81.09
Bra033163.1-P	Field mustard	plastid	79.41	80.43
CDY25267	Canola	plastid	79.41	80.43
CDX94238	Canola	plastid	78.99	80.0
AT4G23900.1	Thale cress	mitochondrion	79.41	79.75
Bra035260.1-P	Field mustard	mitochondrion	78.99	79.66
CDX86826	Canola	mitochondrion	78.99	79.66
KRH41307	Soybean	mitochondrion	78.15	78.81
KRH60038	Soybean	mitochondrion	77.73	78.72
CDY47613	Canola	mitochondrion	76.89	77.22
Bra013742.1-P	Field mustard	mitochondrion	76.47	76.79
CDY03508	Canola	mitochondrion, plastid	75.21	75.53
Os05t0595400-01	Rice	plastid	74.37	74.06
GSMUA_Achr4P01100_001	Banana	mitochondrion	73.11	73.11
GSMUA_Achr1P11560_001	Banana	mitochondrion	72.69	73.0
Zm00001d039221_P001	Maize	mitochondrion	70.59	70.89
Zm00001d009774_P001	Maize	mitochondrion	69.75	69.75
TraesCS1A01G444300.1	Wheat	mitochondrion, plastid	70.59	69.71
KXG22725	Sorghum	mitochondrion	71.01	69.55
HORVU1Hr1G095400.2	Barley	plastid	71.01	68.15
TraesCS1B01G478800.1	Wheat	plastid	70.59	67.74
Zm00001d004713_P001	Maize	endoplasmic reticulum	51.26	63.87
PGSC0003DMT400080042	Potato	cytosol	35.71	57.43
PGSC0003DMT400039453	Potato	cytosol	34.45	50.31
Zm00001d024444_P001	Maize	plastid	55.88	46.02
PGSC0003DMT400069352	Potato	mitochondrion	39.92	42.41
AT4G23895.3	Thale cress	cytosol	78.57	40.04
PGSC0003DMT400011148	Potato	endoplasmic reticulum	21.85	30.23
CDY40857	Canola	endoplasmic reticulum, golgi	39.92	28.36

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:6.3.2.4	ProteinID:ACV60545
ProteinID:ACV60545.1	ProteinID:ADF45668	ProteinID:ADF45668.1	UniProt:D5ILC3	EMBL:FJ743686	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004550	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006139
GO:GO:0006165	GO:GO:0006183	GO:GO:0006228	GO:GO:0006241	GO:GO:0006950	GO:GO:0006979
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009536	GO:GO:0009987
GO:GO:0016020	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0050897	EMBL:GU144806
InterPro:IPR036850	HAMAP:MF_00451	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS
PFAM:PF00334	EnsemblPlantsGene:PGSC0003DMG400012276	PGSC:PGSC0003DMG400012276	EnsemblPlants:PGSC0003DMT400031997	PRINTS:PR01243	ScanProsite:PS00469
PANTHER:PTHR11349	PANTHER:PTHR11349:SF91	SMART:SM00562	SUPFAM:SSF54919	UniParc:UPI0001D16028	SEG:seg

Description

Nucleoside diphosphate kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400012276]

Coordinates

chr8:+:56041124..56044564

Molecular Weight (calculated)

25790.8 Da

IEP (calculated)

9.761

GRAVY (calculated)

-0.214

Length

238 amino acids

Sequence
(BLAST)

001: MNSQICRSAS RAAKSLLSAS SKQTSRAFSG GRAAAAAATV SLRGVVPSLA SYGRSESGNA SRAWISGVLA LPAAAYMLQE QEAHAAEMER TFIAIKPDGV
101: QRGLISEIVS RFERKGFKLV AIKVVIPSKE FAKKHYHDLS ERPFFNGLCD FLSSGPVLAM VWEGEGVIRY GRKLIGATDP QKSEPGTIRG DLAVVVGRNI
201: IHGSDGPETA KDEINLWFKP EELVKYTSNS EKWLYGDN

Best Arabidopsis Sequence Match ( AT4G23900.1 )
(BLAST)

001: MSSQICRSAS RAARSLLSSA KNARFFSEGR AIGAASVVHA TGKVPQYASN FGKSGSGFVS NSWITGLLAL PAAAFMLQDQ EALAAEMERT FIAIKPDGVQ
101: RGLISEIITR FERKGYKLVG IKVMVPSKGF AQKHYHDLKE RPFFNGLCNF LSSGPVVAMV WEGEGVIRYG RKLIGATDPQ KSEPGTIRGD LAVVVGRNII
201: HGSDGPETAK DEISLWFKPE ELVSYTSNAE KWIYGQN

Arabidopsis Description

NDK4Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LAH8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.